Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RNU1-62P-201ENST00000362599 164 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 RNU6-280P-201ENST00000364145 104 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 RNU6-17P-201ENST00000384245 107 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 RNU6-18P-201ENST00000384527 107 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 USMG5P1-201ENST00000425964 177 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 MTCO3P29-201ENST00000432119 779 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC099677.2-201ENST00000436385 175 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.06□□□□□ -2.08
SKA1Q96BD8 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.06□□□□□ -2.08
SKA1Q96BD8 PPP1R2P5-201ENST00000457256 603 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 RNU6-329P-201ENST00000459618 107 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC025465.3-201ENST00000510570 311 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 RNA5SP384-201ENST00000516615 116 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC134698.4-201ENST00000523451 826 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.06□□□□□ -2.08
SKA1Q96BD8 MIR8074-201ENST00000615081 81 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC098679.4-201ENST00000624241 654 ntBASIC2.06□□□□□ -2.08
SKA1Q96BD8 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SKA1Q96BD8 AC010615.1-201ENST00000594254 1764 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 Y_RNA.533-201ENST00000384596 114 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 AL023284.1-201ENST00000403956 276 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 AL356776.1-201ENST00000406574 447 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 USP9YP30-201ENST00000430729 455 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.05□□□□□ -2.08
SKA1Q96BD8 RPL30P10-201ENST00000488148 337 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 RPL36AP21-201ENST00000490372 323 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 RNA5SP458-201ENST00000516188 119 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 Y_RNA.682-201ENST00000516457 100 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.05□□□□□ -2.08
SKA1Q96BD8 AC027288.2-201ENST00000553028 243 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.05□□□□□ -2.08
SKA1Q96BD8 AC011494.1-201ENST00000596454 237 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 DUXAP9-208ENST00000622815 614 ntBASIC2.05□□□□□ -2.08
SKA1Q96BD8 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA1Q96BD8 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SKA1Q96BD8 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.04□□□□□ -2.08
SKA1Q96BD8 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.04□□□□□ -2.08
SKA1Q96BD8 RNU6-414P-201ENST00000363705 104 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 SNORA72.2-201ENST00000365028 127 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 RNU6-296P-201ENST00000384608 107 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 MIR515-2-201ENST00000384883 83 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 MIR515-1-201ENST00000384884 83 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SKA1Q96BD8 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SKA1Q96BD8 SUMO2P12-201ENST00000405924 140 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 RNU6-57P-201ENST00000411348 103 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 AC007098.1-201ENST00000420122 367 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.04□□□□□ -2.08
SKA1Q96BD8 FTH1P12-201ENST00000432137 551 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 AC007677.1-201ENST00000445757 515 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 HMGN2P23-201ENST00000456759 269 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 SNORD5.1-201ENST00000458800 75 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 AC060780.3-201ENST00000589464 80 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 U6atac.1-201ENST00000616025 117 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 AC126177.8-201ENST00000618339 1015 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 snoZ196.1-201ENST00000625269 89 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.04□□□□□ -2.08
SKA1Q96BD8 AC068205.3-201ENST00000636385 468 ntBASIC2.04□□□□□ -2.08
SKA1Q96BD8 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
SKA1Q96BD8 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SKA1Q96BD8 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SKA1Q96BD8 Y_RNA.72-201ENST00000362894 103 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 RNU6-595P-201ENST00000363944 107 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 RNA5SP99-201ENST00000364020 114 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 SNORA67.2-201ENST00000384300 149 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 U8.13-201ENST00000390842 128 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 MIR934-201ENST00000401241 83 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 AL117342.1-201ENST00000404861 406 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 MIR1253-201ENST00000408273 105 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 MTND3P8-201ENST00000412909 339 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 RPL30P16-201ENST00000419341 429 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 AC008134.1-201ENST00000420943 193 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 HSPE1P21-201ENST00000438283 308 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 AC027575.1-201ENST00000481064 460 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 MTND5P5-201ENST00000503764 376 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 RNU6-358P-201ENST00000516564 75 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 RNA5SP481-201ENST00000516814 122 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.03□□□□□ -2.08
SKA1Q96BD8 AC104581.2-201ENST00000572227 430 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 MIR4742-201ENST00000581069 85 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 AC011712.1-201ENST00000588959 234 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 AC006001.4-201ENST00000622243 395 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 MIR338-201ENST00000636369 67 ntBASIC2.03□□□□□ -2.08
SKA1Q96BD8 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.09
SKA1Q96BD8 snoU2-30.2-201ENST00000362805 70 ntBASIC2.02□□□□□ -2.09
SKA1Q96BD8 RNU6-873P-201ENST00000363833 107 ntBASIC2.02□□□□□ -2.09
SKA1Q96BD8 RNU6-593P-201ENST00000364716 112 ntBASIC2.02□□□□□ -2.09
SKA1Q96BD8 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SKA1Q96BD8 RNU6-159P-201ENST00000391080 106 ntBASIC2.02□□□□□ -2.09
SKA1Q96BD8 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA1Q96BD8 AC084364.2-201ENST00000546924 395 ntBASIC2.02□□□□□ -2.09
SKA1Q96BD8 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA1Q96BD8 HSBP1P1-201ENST00000555205 166 ntBASIC2.02□□□□□ -2.09
SKA1Q96BD8 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms