Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC243428.1-201ENST00000421099 264 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 UBE2V1P8-201ENST00000437166 265 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 NFU1P2-201ENST00000448700 469 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 MTND1P17-201ENST00000448961 204 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 RNU6-58P-201ENST00000517143 103 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 AC084364.2-201ENST00000546924 395 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 UBL5P4-201ENST00000562584 236 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 U6.108-201ENST00000637764 58 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 MIR302D-201ENST00000362275 68 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 RNU6-661P-201ENST00000362409 107 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 RNU1-62P-201ENST00000362599 164 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 Y_RNA.67-201ENST00000362870 100 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 SNORA4.2-201ENST00000365313 147 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 RNU6-933P-201ENST00000384424 107 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 RNU6-1026P-201ENST00000384465 108 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 MIR32-201ENST00000384965 70 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 RNU6-174P-201ENST00000410406 106 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AL161935.2-201ENST00000414627 60 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 USP9YP30-201ENST00000430729 455 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 HMGN2P34-201ENST00000437647 269 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AL606517.2-201ENST00000442855 241 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 SUMO2P18-201ENST00000518873 252 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AC026470.2-201ENST00000561492 181 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 SUB1P3-201ENST00000564581 315 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AL353149.1-201ENST00000610667 244 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AC006504.8-201ENST00000621046 635 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 AC008873.1-201ENST00000625051 138 ntBASIC1.25□□□□□ -2.21
CCDC54Q8NEL0 MTND4P12-201ENST00000498999 1377 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 MIR26B-201ENST00000362251 77 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 SNORD87-201ENST00000364849 89 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RNA5SP126-201ENST00000365092 109 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RNU6-203P-201ENST00000384038 104 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RNU6-1235P-201ENST00000384559 107 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 MIR586-201ENST00000385035 97 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 MIR300-201ENST00000401138 83 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RPL30P16-201ENST00000419341 429 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 NCOR1P3-201ENST00000420479 303 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 MTCO3P29-201ENST00000432119 779 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 HSPE1P9-201ENST00000440046 311 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 DAP3P1-201ENST00000441522 278 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 SNRPGP13-201ENST00000442212 177 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 AL353572.1-201ENST00000442490 417 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 AC112492.4-201ENST00000456549 352 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 snoU13.15-201ENST00000459407 104 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RNU6-498P-201ENST00000459468 107 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RPL26P26-201ENST00000480251 434 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RNU4-49P-201ENST00000516080 140 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RNU6-566P-201ENST00000516790 107 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RNA5SP454-201ENST00000517231 127 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 POLR3GP2-201ENST00000588366 668 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 AC124303.1-201ENST00000605703 360 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 AC007014.2-201ENST00000615581 479 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 U4.5-201ENST00000617137 123 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 AC009248.2-201ENST00000619826 254 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 AC009033.1-201ENST00000624279 431 ntBASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.24□□□□□ -2.21
CCDC54Q8NEL0 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 Y_RNA.48-201ENST00000362710 103 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 Y_RNA.132-201ENST00000363421 102 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 RNU6-873P-201ENST00000363833 107 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 SNORD115-32-201ENST00000364079 82 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 RNU1-96P-201ENST00000364163 162 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 RNU6-1305P-201ENST00000364353 104 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 RNU6-60P-201ENST00000364792 103 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 RNU6-17P-201ENST00000384245 107 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 RNU6-18P-201ENST00000384527 107 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 MIR758-201ENST00000390227 88 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 RNA5SP213-201ENST00000391031 106 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 MTATP6P13-201ENST00000438531 667 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 SNORA59A-201ENST00000459326 152 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms