Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR515-2-201ENST00000384883 83 ntBASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 MIR515-1-201ENST00000384884 83 ntBASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 AF186996.7-201ENST00000492781 209 ntBASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 RMST_2.1-201ENST00000617263 136 ntBASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 AP000648.3-201ENST00000623539 4507 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 RNU6-1065P-201ENST00000384513 106 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 AC007098.1-201ENST00000420122 367 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 AC098826.2-201ENST00000452011 651 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 RNU7-34P-201ENST00000459394 64 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 RPS26P45-201ENST00000471748 340 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 AC099513.1-201ENST00000490423 301 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 Y_RNA.688-201ENST00000516565 95 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 AC026371.1-201ENST00000551867 419 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 AL158211.1-201ENST00000566763 763 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 MIR4709-201ENST00000577272 72 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 AC100830.2-201ENST00000581636 240 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 AC136443.5-201ENST00000603741 370 ntBASIC1.45□□□□□ -2.18
HDDC3Q8N4P3 MTND5P26-201ENST00000426018 1752 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 RNY1-201ENST00000364228 113 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 Y_RNA.231-201ENST00000364358 102 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SNORD114-22-201ENST00000365423 72 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SNORD116-9-201ENST00000384000 95 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SNORD116-3-201ENST00000384287 95 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SNORD116-7-201ENST00000384404 95 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SNORD116-5-201ENST00000384462 95 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 RNA5SP323-201ENST00000391094 133 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 MIR450B-201ENST00000401182 78 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 RNU6-57P-201ENST00000411348 103 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 AL161935.2-201ENST00000414627 60 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 RPL30P13-201ENST00000418873 348 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SNRPEP10-201ENST00000420249 274 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 RPS27P16-201ENST00000425758 201 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 AC027119.1-201ENST00000440877 241 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SNRPGP13-201ENST00000442212 177 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 AC007215.1-201ENST00000464893 276 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 RNU6-405P-201ENST00000516637 110 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 RNU6-835P-201ENST00000516974 104 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 AL078596.1-201ENST00000624856 447 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 SCARNA4-201ENST00000629045 128 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 MTND5P10-201ENST00000603719 1809 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 OR4G1P-203ENST00000641984 1631 ntBASIC1.44□□□□□ -2.18
HDDC3Q8N4P3 MIR26B-201ENST00000362251 77 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 Y_RNA.112-201ENST00000363250 102 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 RNU6-259P-201ENST00000383999 107 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 RNU6-203P-201ENST00000384038 104 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 RNU6-784P-201ENST00000384330 106 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 RNU6-790P-201ENST00000384479 105 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 MIR586-201ENST00000385035 97 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 MIR514A2-201ENST00000385131 88 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 MIR514A3-201ENST00000385132 88 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 MTCO3P40-201ENST00000392516 676 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 RNU6-648P-201ENST00000410190 107 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 RNU7-57P-201ENST00000459540 60 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 AC004492.1-201ENST00000607036 742 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 ZNF204P-201ENST00000416749 2397 ntBASIC1.43□□□□□ -2.18
HDDC3Q8N4P3 AC121333.1-201ENST00000567488 2709 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 U8.1-201ENST00000362843 134 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 RNU6-417P-201ENST00000384712 107 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 RNU6-955P-201ENST00000410497 104 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 RN7SKP51-201ENST00000410781 304 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 AC004866.1-201ENST00000411748 78 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 SDAD1P3-201ENST00000427380 333 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 AC083904.1-201ENST00000487828 231 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 Y_RNA.670-201ENST00000516255 105 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 RNA5SP480-201ENST00000516840 109 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 RNU1-117P-201ENST00000517041 158 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 AC015688.6-201ENST00000577737 104 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 CPDP1-201ENST00000579660 283 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 AL078604.3-201ENST00000615580 211 ntBASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
HDDC3Q8N4P3 SNORA33-201ENST00000363664 130 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 SNORA4.2-201ENST00000365313 147 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 RNU6-128P-201ENST00000383976 107 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 SNORD26-201ENST00000384147 75 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 USP9YP14-201ENST00000430663 563 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 ERLEC1P1-201ENST00000433806 578 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 AL353572.1-201ENST00000442490 417 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms