Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU1-92P-201ENST00000517017 135 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 MIR8063-201ENST00000621930 81 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 ICE2P2-201ENST00000483823 2787 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 Y_RNA.41-201ENST00000362646 102 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 snoU2-30.2-201ENST00000362805 70 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 SNORA33-201ENST00000363664 130 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 RNY3P3-201ENST00000363816 102 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 SNORA67.2-201ENST00000384300 149 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 RNU6-95P-201ENST00000384697 107 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 RNU6-482P-201ENST00000391068 107 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 RPL30P13-201ENST00000418873 348 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 AL590632.1-201ENST00000424289 371 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 HMGN2P34-201ENST00000437647 269 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 AL353572.1-201ENST00000442490 417 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 PCMTD1P1-201ENST00000455560 355 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 MTND1P11-201ENST00000456661 876 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 RNU7-66P-201ENST00000459469 62 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 RNU6-902P-201ENST00000517212 91 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 AC008269.2-201ENST00000561915 1105 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 SUB1P3-201ENST00000564581 315 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 AC006001.4-201ENST00000622243 395 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 MIR1321-201ENST00000637766 79 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 AC099654.12-201ENST00000639868 649 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 ZNF72P-201ENST00000425869 1908 ntBASIC1.48□□□□□ -2.17
CCDC40Q4G0X9 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 RNU4-75P-201ENST00000364621 146 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 SNORD1A-201ENST00000364968 72 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 AL590002.1-201ENST00000406554 418 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 MIR320B2-201ENST00000408479 138 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 AL161935.2-201ENST00000414627 60 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 Z82205.1-201ENST00000428456 297 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 MTCO3P18-201ENST00000440206 761 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 AC073910.1-201ENST00000445047 438 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 AC074290.1-201ENST00000448883 135 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 RNU7-57P-201ENST00000459540 60 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 AC099513.1-201ENST00000490423 301 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 TRBVA-201ENST00000498804 316 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 MTCO2P30-201ENST00000503662 364 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 AL138726.1-201ENST00000614873 333 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 ZNF209P-201ENST00000593450 2304 ntBASIC1.47□□□□□ -2.17
CCDC40Q4G0X9 Y_RNA.517-201ENST00000384551 106 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 MIR758-201ENST00000390227 88 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 RNU6-57P-201ENST00000411348 103 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AC108667.1-201ENST00000428618 249 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 Z82188.1-201ENST00000436709 154 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 snoU13.27-201ENST00000459278 104 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 RNU6-344P-201ENST00000516635 111 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AL161670.1-201ENST00000554348 137 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 DNAJC19P9-201ENST00000555084 351 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AC245505.1-201ENST00000556398 224 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AC023043.2-201ENST00000589678 1026 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AF250324.2-201ENST00000608299 610 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 AC008873.1-201ENST00000625051 138 ntBASIC1.46□□□□□ -2.18
CCDC40Q4G0X9 MIR26B-201ENST00000362251 77 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 SNORA4.2-201ENST00000365313 147 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 SNORD26-201ENST00000384147 75 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 Y_RNA.530-201ENST00000384587 101 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 RNU6-331P-201ENST00000384724 107 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 RNU6-332P-201ENST00000391193 108 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 MTCYBP18-201ENST00000501056 747 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 AC093534.1-201ENST00000504977 132 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 RNU6-506P-201ENST00000516553 94 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 RNU6-314P-201ENST00000516574 104 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 RNU1-117P-201ENST00000517041 158 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 MTND1P5-201ENST00000517906 940 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 AL121890.5-201ENST00000620848 304 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 AL078596.1-201ENST00000624856 447 ntBASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC40Q4G0X9 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 SNORD115-8-201ENST00000363856 82 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 RNU6-1090P-201ENST00000364065 94 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 RNU4-24P-201ENST00000364565 139 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 Y_RNA.287-201ENST00000364853 94 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 RNU4-9P-201ENST00000364951 139 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 SNORA72.2-201ENST00000365028 127 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 SNORD115-38-201ENST00000365037 82 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 RNU6-417P-201ENST00000384712 107 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 MIR32-201ENST00000384965 70 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 RNA5SP504-201ENST00000410676 117 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 AC016909.1-201ENST00000415916 166 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 ZNF885P-201ENST00000420174 1098 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 DLGAP5P1-201ENST00000430307 464 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms