Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ATP5EP1-201ENST00000510257 156 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 MIR3126-201ENST00000577443 74 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 AL161431.1-201ENST00000618966 4205 ntBASIC3.21□□□□□ -1.89
CCDC144BQ3MJ40 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 SNORA63C-201ENST00000364578 129 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-1310P-201ENST00000384153 107 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 MIR196B-201ENST00000384852 84 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 RNU2-34P-201ENST00000516534 121 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 AC113195.1-201ENST00000579952 141 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 AC090115.4-201ENST00000609970 188 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 PART1_1.1-201ENST00000611761 217 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
CCDC144BQ3MJ40 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 Y_RNA.332-201ENST00000365271 113 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 Y_RNA.415-201ENST00000384012 112 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 Y_RNA.439-201ENST00000384119 94 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 Y_RNA.458-201ENST00000384240 102 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 AC123900.1-201ENST00000420390 96 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 RPL39P40-201ENST00000445481 146 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 AL118496.2-201ENST00000448300 230 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 PRELID3BP1-201ENST00000457142 540 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 SRIP1-201ENST00000489235 288 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-327P-201ENST00000516270 127 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-1045P-201ENST00000516321 107 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-948P-201ENST00000516374 107 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 Y_RNA.720-201ENST00000517166 92 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 AL021879.1-201ENST00000611756 288 ntBASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC144BQ3MJ40 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 Y_RNA.99-201ENST00000363138 105 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 RNU1-112P-201ENST00000364401 164 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 RNU1-91P-201ENST00000364746 163 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-926P-201ENST00000384075 107 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-625P-201ENST00000459412 107 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 HMGN2P9-201ENST00000476875 229 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 AC067942.3-201ENST00000512025 362 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 SNORA4.4-201ENST00000515921 135 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-991P-201ENST00000516168 107 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-1137P-201ENST00000517073 99 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 AC018448.1-201ENST00000552843 316 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 MIR4658-201ENST00000584344 65 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 AL360085.1-201ENST00000604713 532 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.19□□□□□ -1.9
CCDC144BQ3MJ40 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-450P-201ENST00000364654 107 ntBASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-1264P-201ENST00000383891 107 ntBASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 AL138827.1-201ENST00000402666 306 ntBASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 TOMM22P2-201ENST00000430735 237 ntBASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 AC073910.1-201ENST00000445047 438 ntBASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-107P-201ENST00000516643 102 ntBASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 MIR4435-1-201ENST00000582552 80 ntBASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.18□□□□□ -1.9
CCDC144BQ3MJ40 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 RNU1-148P-201ENST00000384472 162 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 MIR9-1-201ENST00000385198 89 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 RNA5SP504-201ENST00000410676 117 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 OOSP1P1-201ENST00000423265 274 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 RPEP5-201ENST00000441137 268 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 MTND5P22-201ENST00000458380 195 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 AC003982.1-202ENST00000469928 248 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-408P-201ENST00000515910 100 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 PRELID2P1-201ENST00000552837 301 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 AC008737.2-201ENST00000599446 118 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 AC025754.2-201ENST00000606491 432 ntBASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC144BQ3MJ40 MIR410-201ENST00000362222 80 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-859P-201ENST00000362728 107 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 VTRNA1-1-201ENST00000363120 99 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 Y_RNA.276-201ENST00000364732 109 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 SNORD87-201ENST00000364849 89 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 RNU6-975P-201ENST00000384296 105 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 SNORA40.19-201ENST00000390846 128 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 RNA5SP475-201ENST00000410568 110 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 RNU7-57P-201ENST00000459540 60 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms