Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL356575.1-201ENST00000603008 283 ntBASIC2.88□□□□□ -1.95
COL4A3Q01955 AC006111.3-201ENST00000622137 383 ntBASIC2.88□□□□□ -1.95
COL4A3Q01955 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A3Q01955 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.87□□□□□ -1.95
COL4A3Q01955 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL4A3Q01955 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A3Q01955 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.87□□□□□ -1.95
COL4A3Q01955 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.87□□□□□ -1.95
COL4A3Q01955 RBBP8P1-201ENST00000449447 1844 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.87□□□□□ -1.95
COL4A3Q01955 RNU6-270P-201ENST00000364131 105 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 MIR489-201ENST00000384923 84 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 MIR549A-201ENST00000385268 96 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A3Q01955 AL513328.1-201ENST00000446460 224 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 SNORA31.21-201ENST00000517180 77 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A3Q01955 AC107016.2-201ENST00000547968 190 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.87□□□□□ -1.95
COL4A3Q01955 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
COL4A3Q01955 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
COL4A3Q01955 PWAR6-201ENST00000552334 4618 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 AC093010.3-201ENST00000570269 15214 ntBASIC2.87□□□□□ -1.95
COL4A3Q01955 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL4A3Q01955 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL4A3Q01955 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.87□□□□□ -1.95
COL4A3Q01955 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A3Q01955 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A3Q01955 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.86□□□□□ -1.95
COL4A3Q01955 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
COL4A3Q01955 RNU4-80P-201ENST00000363200 141 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 EI24P2-201ENST00000397776 1076 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 AL138827.1-201ENST00000402666 306 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 MIR1289-2-201ENST00000408360 111 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 RNU2-54P-201ENST00000410299 190 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 UQCRHP3-201ENST00000451503 251 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 snoU13.28-201ENST00000459235 104 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 RNU6-191P-201ENST00000516295 94 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.86□□□□□ -1.95
COL4A3Q01955 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.86□□□□□ -1.95
COL4A3Q01955 MIR3145-201ENST00000580727 82 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 MIR3136-201ENST00000583498 78 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 MIR7153-201ENST00000637758 57 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
COL4A3Q01955 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
COL4A3Q01955 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A3Q01955 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A3Q01955 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.86□□□□□ -1.95
COL4A3Q01955 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A3Q01955 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
COL4A3Q01955 AC002543.1-201ENST00000299783 1954 ntBASIC2.86□□□□□ -1.95
COL4A3Q01955 RNU1-62P-201ENST00000362599 164 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNU6-653P-201ENST00000363074 106 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNA5SP68-201ENST00000363885 119 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNU6-312P-201ENST00000364629 107 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 Y_RNA.272-201ENST00000364696 102 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 Y_RNA.580-201ENST00000391004 95 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A3Q01955 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.85□□□□□ -1.95
COL4A3Q01955 RPS15AP5-201ENST00000436276 388 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 AL121594.1-201ENST00000475906 575 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 AC006445.2-201ENST00000510061 472 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNU5F-2P-201ENST00000516066 82 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNU6-155P-201ENST00000516347 100 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNU2-58P-201ENST00000516403 183 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNU6-966P-201ENST00000516479 104 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNA5SP148-201ENST00000516527 94 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.85□□□□□ -1.95
COL4A3Q01955 AC105137.2-201ENST00000569073 466 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 MIR5692C2-201ENST00000577959 77 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 MIR6817-201ENST00000615588 66 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
COL4A3Q01955 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.85□□□□□ -1.95
COL4A3Q01955 Y_RNA.7-201ENST00000362352 102 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNU6-727P-201ENST00000363592 107 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 SNORD114-30-201ENST00000364448 72 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RNU6-1117P-201ENST00000384525 104 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 CBX3P9-201ENST00000402326 552 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 AL357139.1-201ENST00000407792 426 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.85□□□□□ -1.95
COL4A3Q01955 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A3Q01955 RNA5SP310-201ENST00000459084 116 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 RPS27AP9-201ENST00000477681 438 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.85□□□□□ -1.95
COL4A3Q01955 AC006199.1-201ENST00000548728 219 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 HMGN2P15-201ENST00000585707 270 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 AL133393.1-201ENST00000603277 287 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 AC005520.5-201ENST00000613926 164 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 SNORD98-201ENST00000636377 67 ntBASIC2.85□□□□□ -1.95
COL4A3Q01955 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC2.85□□□□□ -1.95
COL4A3Q01955 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
COL4A3Q01955 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
COL4A3Q01955 RNU6-799P-201ENST00000363567 107 ntBASIC2.84□□□□□ -1.95
COL4A3Q01955 Y_RNA.343-201ENST00000365354 112 ntBASIC2.84□□□□□ -1.95
COL4A3Q01955 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.84□□□□□ -1.95
COL4A3Q01955 RN7SL330P-201ENST00000469709 307 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms