Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.39□□□□□ -2.03
HDAC4P56524 AC092447.9-201ENST00000603395 144 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.39□□□□□ -2.03
HDAC4P56524 MIR6766-201ENST00000622641 72 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 MIR4272-201ENST00000635924 64 ntBASIC2.39□□□□□ -2.03
HDAC4P56524 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.39□□□□□ -2.03
HDAC4P56524 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.39□□□□□ -2.03
HDAC4P56524 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
HDAC4P56524 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HDAC4P56524 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HDAC4P56524 Y_RNA.80-201ENST00000362996 102 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 RNU6-546P-201ENST00000383991 107 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 Y_RNA.428-201ENST00000384078 102 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 Y_RNA.485-201ENST00000384395 102 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 Y_RNA.557-201ENST00000384680 107 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 MIR10B-201ENST00000385011 110 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 RNU2-48P-201ENST00000410694 191 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 RNU2-32P-201ENST00000411193 191 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 AC004866.1-201ENST00000411748 78 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.38□□□□□ -2.03
HDAC4P56524 RNU6-991P-201ENST00000516168 107 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 Y_RNA.706-201ENST00000516933 99 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 HSPE1P18-201ENST00000517602 280 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.38□□□□□ -2.03
HDAC4P56524 AP003072.1-201ENST00000531740 145 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.38□□□□□ -2.03
HDAC4P56524 MIR4648-201ENST00000580107 72 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 AC022432.1-201ENST00000595739 310 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 AL353621.2-201ENST00000605340 133 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.38□□□□□ -2.03
HDAC4P56524 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.38□□□□□ -2.03
HDAC4P56524 MTND5P16-201ENST00000460269 1703 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 Y_RNA.314-201ENST00000365114 102 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 Y_RNA.319-201ENST00000365138 92 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 RNU1-115P-201ENST00000365329 160 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 Y_RNA.358-201ENST00000365491 99 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 SNORA25B-201ENST00000365507 128 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 Y_RNA.364-201ENST00000365532 101 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 RNU6-159P-201ENST00000391080 106 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 MIR1294-201ENST00000408503 142 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 Y_RNA.592-201ENST00000410274 109 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 AC007098.1-201ENST00000420122 367 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.37□□□□□ -2.03
HDAC4P56524 AL160004.2-201ENST00000432935 350 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 AL591806.2-201ENST00000433122 173 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.37□□□□□ -2.03
HDAC4P56524 RNU7-169P-201ENST00000459456 61 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 SNORA4.4-201ENST00000515921 135 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 RNA5SP281-201ENST00000516504 135 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 RNU6-548P-201ENST00000517083 115 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 AC022616.8-201ENST00000533569 253 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 AC025754.2-201ENST00000606491 432 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 AC006157.1-201ENST00000611750 366 ntBASIC2.37□□□□□ -2.03
HDAC4P56524 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.37□□□□□ -2.03
HDAC4P56524 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.37□□□□□ -2.03
HDAC4P56524 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
HDAC4P56524 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
HDAC4P56524 Y_RNA.645-201ENST00000391229 102 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 RNU1-139P-201ENST00000391307 165 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 U3.40-201ENST00000408706 208 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.36□□□□□ -2.03
HDAC4P56524 EIF1P2-201ENST00000428233 350 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.36□□□□□ -2.03
HDAC4P56524 AC132942.1-201ENST00000486753 483 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 RPS27P21-201ENST00000486977 252 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 AC018868.1-201ENST00000491307 315 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 MIR449C-201ENST00000516047 92 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 AC026470.2-201ENST00000561492 181 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.36□□□□□ -2.03
HDAC4P56524 AC090517.1-201ENST00000569307 266 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.36□□□□□ -2.03
HDAC4P56524 AC125232.2-201ENST00000592457 143 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 AC007742.2-201ENST00000618226 398 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.36□□□□□ -2.03
HDAC4P56524 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.36□□□□□ -2.03
HDAC4P56524 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.36□□□□□ -2.03
HDAC4P56524 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
HDAC4P56524 MIRLET7G-201ENST00000362280 84 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 RNU4-52P-201ENST00000384209 138 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 RNU6-708P-201ENST00000384217 107 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 MIR625-201ENST00000385047 85 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 EDDM3CP-201ENST00000415977 425 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 Z98742.3-201ENST00000418637 326 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 RNU7-193P-201ENST00000516723 65 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 RNU6-1137P-201ENST00000517073 99 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
HDAC4P56524 AC090617.3-201ENST00000573670 475 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.35□□□□□ -2.03
HDAC4P56524 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.35□□□□□ -2.03
HDAC4P56524 AC012640.5-201ENST00000623897 319 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 AL606534.2-204ENST00000635008 178 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
HDAC4P56524 BX322639.1-202ENST00000423987 2213 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 MTND5P6-201ENST00000422338 1798 ntBASIC2.35□□□□□ -2.03
HDAC4P56524 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
HDAC4P56524 ZNF720P1-201ENST00000562403 1939 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
HDAC4P56524 MTND4P1-201ENST00000457501 1466 ntBASIC2.34□□□□□ -2.03
HDAC4P56524 ZNF204P-201ENST00000416749 2397 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms