Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-1208P-201ENST00000459588 107 ntBASIC1.34□□□□□ -2.19
MSH6P52701 AC092989.1-201ENST00000481235 277 ntBASIC1.34□□□□□ -2.19
MSH6P52701 AC025423.5-201ENST00000550230 219 ntBASIC1.34□□□□□ -2.19
MSH6P52701 AL157687.1-201ENST00000554853 619 ntBASIC1.34□□□□□ -2.19
MSH6P52701 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.34□□□□□ -2.19
MSH6P52701 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
MSH6P52701 AL158209.2-201ENST00000619266 216 ntBASIC1.34□□□□□ -2.19
MSH6P52701 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
MSH6P52701 AC068700.1-201ENST00000565862 3754 ntBASIC1.34□□□□□ -2.19
MSH6P52701 Y_RNA.51-201ENST00000362725 102 ntBASIC1.34□□□□□ -2.2
MSH6P52701 RNU6-562P-201ENST00000362731 107 ntBASIC1.34□□□□□ -2.2
MSH6P52701 RNU5B-2P-201ENST00000363036 113 ntBASIC1.34□□□□□ -2.2
MSH6P52701 RNU6-1085P-201ENST00000363576 107 ntBASIC1.34□□□□□ -2.2
MSH6P52701 RNU6-1317P-201ENST00000364582 104 ntBASIC1.34□□□□□ -2.2
MSH6P52701 RNU6-296P-201ENST00000384608 107 ntBASIC1.34□□□□□ -2.2
MSH6P52701 MTCO3P40-201ENST00000392516 676 ntBASIC1.34□□□□□ -2.2
MSH6P52701 ARL5AP1-201ENST00000418991 388 ntBASIC1.34□□□□□ -2.2
MSH6P52701 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
MSH6P52701 AL359672.1-201ENST00000442302 409 ntBASIC1.34□□□□□ -2.2
MSH6P52701 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.34□□□□□ -2.2
MSH6P52701 SNORD60.2-201ENST00000516883 86 ntBASIC1.34□□□□□ -2.2
MSH6P52701 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.34□□□□□ -2.2
MSH6P52701 MIR5094-201ENST00000578766 85 ntBASIC1.34□□□□□ -2.2
MSH6P52701 CPDP1-201ENST00000579660 283 ntBASIC1.34□□□□□ -2.2
MSH6P52701 AC092807.2-201ENST00000609367 243 ntBASIC1.34□□□□□ -2.2
MSH6P52701 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.34□□□□□ -2.2
MSH6P52701 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.34□□□□□ -2.2
MSH6P52701 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.34□□□□□ -2.2
MSH6P52701 AC245060.5-201ENST00000610778 3293 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AC018630.2-201ENST00000534866 2403 ntBASIC1.33□□□□□ -2.2
MSH6P52701 Y_RNA.433-201ENST00000384089 102 ntBASIC1.33□□□□□ -2.2
MSH6P52701 RNU6-17P-201ENST00000384245 107 ntBASIC1.33□□□□□ -2.2
MSH6P52701 RNU6-18P-201ENST00000384527 107 ntBASIC1.33□□□□□ -2.2
MSH6P52701 MIR514A2-201ENST00000385131 88 ntBASIC1.33□□□□□ -2.2
MSH6P52701 MIR514A3-201ENST00000385132 88 ntBASIC1.33□□□□□ -2.2
MSH6P52701 CALM2P3-201ENST00000400429 449 ntBASIC1.33□□□□□ -2.2
MSH6P52701 MTCO1P21-201ENST00000416634 589 ntBASIC1.33□□□□□ -2.2
MSH6P52701 MTND3P9-201ENST00000429526 346 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AC099677.2-201ENST00000436385 175 ntBASIC1.33□□□□□ -2.2
MSH6P52701 MTND1P29-201ENST00000448112 647 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AC112492.4-201ENST00000456549 352 ntBASIC1.33□□□□□ -2.2
MSH6P52701 U8.21-201ENST00000459536 136 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AC010531.2-201ENST00000465012 153 ntBASIC1.33□□□□□ -2.2
MSH6P52701 MTND2P38-201ENST00000522536 667 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AC104576.1-201ENST00000524225 88 ntBASIC1.33□□□□□ -2.2
MSH6P52701 CBX3P8-201ENST00000532412 525 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AC100830.2-201ENST00000581636 240 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AC016925.2-201ENST00000605108 242 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AC073534.2-201ENST00000620377 381 ntBASIC1.33□□□□□ -2.2
MSH6P52701 MIR6513-201ENST00000621188 64 ntBASIC1.33□□□□□ -2.2
MSH6P52701 AL159152.1-201ENST00000635019 2587 ntBASIC1.32□□□□□ -2.2
MSH6P52701 MIR424-201ENST00000362227 98 ntBASIC1.32□□□□□ -2.2
MSH6P52701 RNU6-545P-201ENST00000362681 104 ntBASIC1.32□□□□□ -2.2
MSH6P52701 EIF4E2P1-201ENST00000393781 255 ntBASIC1.32□□□□□ -2.2
MSH6P52701 TIMM9P3-201ENST00000428659 274 ntBASIC1.32□□□□□ -2.2
MSH6P52701 C8orf59P1-201ENST00000429930 303 ntBASIC1.32□□□□□ -2.2
MSH6P52701 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.32□□□□□ -2.2
MSH6P52701 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.32□□□□□ -2.2
MSH6P52701 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.32□□□□□ -2.2
MSH6P52701 snoU13.6-201ENST00000458785 104 ntBASIC1.32□□□□□ -2.2
MSH6P52701 AC087477.1-201ENST00000465747 340 ntBASIC1.32□□□□□ -2.2
MSH6P52701 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.32□□□□□ -2.2
MSH6P52701 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.32□□□□□ -2.2
MSH6P52701 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.32□□□□□ -2.2
MSH6P52701 SNORA19.2-201ENST00000516013 114 ntBASIC1.32□□□□□ -2.2
MSH6P52701 Y_RNA.693-201ENST00000516641 110 ntBASIC1.32□□□□□ -2.2
MSH6P52701 RNA5SP330-201ENST00000517096 96 ntBASIC1.32□□□□□ -2.2
MSH6P52701 DEFB131C-201ENST00000528817 165 ntBASIC1.32□□□□□ -2.2
MSH6P52701 FGF7P1-201ENST00000582820 288 ntBASIC1.32□□□□□ -2.2
MSH6P52701 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.32□□□□□ -2.2
MSH6P52701 MIR8074-201ENST00000615081 81 ntBASIC1.32□□□□□ -2.2
MSH6P52701 AL359880.1-201ENST00000621879 266 ntBASIC1.32□□□□□ -2.2
MSH6P52701 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.32□□□□□ -2.2
MSH6P52701 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.32□□□□□ -2.2
MSH6P52701 OR5AK4P-201ENST00000635912 903 ntBASIC1.32□□□□□ -2.2
MSH6P52701 AC068205.3-201ENST00000636385 468 ntBASIC1.32□□□□□ -2.2
MSH6P52701 Y_RNA.132-201ENST00000363421 102 ntBASIC1.31□□□□□ -2.2
MSH6P52701 RNU6-1286P-201ENST00000383871 107 ntBASIC1.31□□□□□ -2.2
MSH6P52701 RNU6-338P-201ENST00000383888 105 ntBASIC1.31□□□□□ -2.2
MSH6P52701 RNU6-214P-201ENST00000384130 107 ntBASIC1.31□□□□□ -2.2
MSH6P52701 RNU6-439P-201ENST00000384188 106 ntBASIC1.31□□□□□ -2.2
MSH6P52701 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
MSH6P52701 RPS26P42-201ENST00000413485 326 ntBASIC1.31□□□□□ -2.2
MSH6P52701 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.31□□□□□ -2.2
MSH6P52701 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
MSH6P52701 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.31□□□□□ -2.2
MSH6P52701 AC107401.1-201ENST00000503426 685 ntBASIC1.31□□□□□ -2.2
MSH6P52701 AC067942.3-201ENST00000512025 362 ntBASIC1.31□□□□□ -2.2
MSH6P52701 SUMO2P18-201ENST00000518873 252 ntBASIC1.31□□□□□ -2.2
MSH6P52701 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.31□□□□□ -2.2
MSH6P52701 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.31□□□□□ -2.2
MSH6P52701 MRPS36P4-201ENST00000534436 298 ntBASIC1.31□□□□□ -2.2
MSH6P52701 PIGPP4-201ENST00000584447 307 ntBASIC1.31□□□□□ -2.2
MSH6P52701 CTHRC1P1-201ENST00000605383 469 ntBASIC1.31□□□□□ -2.2
MSH6P52701 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.31□□□□□ -2.2
MSH6P52701 RNU6-522P-201ENST00000364497 107 ntBASIC1.3□□□□□ -2.2
MSH6P52701 RNU6-1026P-201ENST00000384465 108 ntBASIC1.3□□□□□ -2.2
MSH6P52701 MIR300-201ENST00000401138 83 ntBASIC1.3□□□□□ -2.2
MSH6P52701 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.3□□□□□ -2.2
MSH6P52701 USP9YP28-201ENST00000435142 589 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms