Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.51□□□□□ -1.85
LIG3P49916 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.51□□□□□ -1.85
LIG3P49916 MIR449C-201ENST00000516047 92 ntBASIC3.51□□□□□ -1.85
LIG3P49916 RNU6-586P-201ENST00000517265 104 ntBASIC3.51□□□□□ -1.85
LIG3P49916 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.51□□□□□ -1.85
LIG3P49916 AC021753.1-201ENST00000635724 168 ntBASIC3.51□□□□□ -1.85
LIG3P49916 MIR7157-201ENST00000635801 60 ntBASIC3.51□□□□□ -1.85
LIG3P49916 U2.22-201ENST00000636441 106 ntBASIC3.51□□□□□ -1.85
LIG3P49916 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.51□□□□□ -1.85
LIG3P49916 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.51□□□□□ -1.85
LIG3P49916 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
LIG3P49916 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.5□□□□□ -1.85
LIG3P49916 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LIG3P49916 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.5□□□□□ -1.85
LIG3P49916 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.5□□□□□ -1.85
LIG3P49916 Y_RNA.7-201ENST00000362352 102 ntBASIC3.5□□□□□ -1.85
LIG3P49916 RNU6-944P-201ENST00000364023 107 ntBASIC3.5□□□□□ -1.85
LIG3P49916 RNU6-234P-201ENST00000365229 104 ntBASIC3.5□□□□□ -1.85
LIG3P49916 Y_RNA.361-201ENST00000365515 120 ntBASIC3.5□□□□□ -1.85
LIG3P49916 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LIG3P49916 MIR1185-2-201ENST00000408687 86 ntBASIC3.5□□□□□ -1.85
LIG3P49916 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.5□□□□□ -1.85
LIG3P49916 MICF-203ENST00000432679 129 ntBASIC3.5□□□□□ -1.85
LIG3P49916 AL135790.2-201ENST00000437701 267 ntBASIC3.5□□□□□ -1.85
LIG3P49916 RPS12P18-201ENST00000442381 270 ntBASIC3.5□□□□□ -1.85
LIG3P49916 AL357552.1-201ENST00000445254 415 ntBASIC3.5□□□□□ -1.85
LIG3P49916 U8.19-201ENST00000459095 133 ntBASIC3.5□□□□□ -1.85
LIG3P49916 CENPBD1P1-201ENST00000464061 469 ntBASIC3.5□□□□□ -1.85
LIG3P49916 SEM1P1-201ENST00000506694 209 ntBASIC3.5□□□□□ -1.85
LIG3P49916 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.5□□□□□ -1.85
LIG3P49916 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.5□□□□□ -1.85
LIG3P49916 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.5□□□□□ -1.85
LIG3P49916 MIR4506-201ENST00000584693 77 ntBASIC3.5□□□□□ -1.85
LIG3P49916 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.5□□□□□ -1.85
LIG3P49916 AL713866.2-201ENST00000603579 219 ntBASIC3.5□□□□□ -1.85
LIG3P49916 MIR7975-201ENST00000619350 68 ntBASIC3.5□□□□□ -1.85
LIG3P49916 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.5□□□□□ -1.85
LIG3P49916 AC093831.2-201ENST00000624393 3427 ntBASIC3.49□□□□□ -1.85
LIG3P49916 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
LIG3P49916 RNU4-35P-201ENST00000362588 141 ntBASIC3.49□□□□□ -1.85
LIG3P49916 RNU1-72P-201ENST00000362976 153 ntBASIC3.49□□□□□ -1.85
LIG3P49916 Y_RNA.170-201ENST00000363746 110 ntBASIC3.49□□□□□ -1.85
LIG3P49916 Y_RNA.368-201ENST00000365547 113 ntBASIC3.49□□□□□ -1.85
LIG3P49916 SNORA72.4-201ENST00000384174 132 ntBASIC3.49□□□□□ -1.85
LIG3P49916 SNORD17-201ENST00000390930 237 ntBASIC3.49□□□□□ -1.85
LIG3P49916 SNORA26.5-201ENST00000391215 123 ntBASIC3.49□□□□□ -1.85
LIG3P49916 RPL30P4-201ENST00000429309 333 ntBASIC3.49□□□□□ -1.85
LIG3P49916 RN7SL75P-201ENST00000461926 281 ntBASIC3.49□□□□□ -1.85
LIG3P49916 RN7SL594P-201ENST00000470590 287 ntBASIC3.49□□□□□ -1.85
LIG3P49916 RNU2-27P-201ENST00000516185 142 ntBASIC3.49□□□□□ -1.85
LIG3P49916 RNU1-143P-201ENST00000516296 146 ntBASIC3.49□□□□□ -1.85
LIG3P49916 SUMO2P18-201ENST00000518873 252 ntBASIC3.49□□□□□ -1.85
LIG3P49916 AC100767.1-201ENST00000528178 123 ntBASIC3.49□□□□□ -1.85
LIG3P49916 U1.23-201ENST00000610293 146 ntBASIC3.49□□□□□ -1.85
LIG3P49916 RNU1-68P-201ENST00000615382 146 ntBASIC3.49□□□□□ -1.85
LIG3P49916 AC013791.1-201ENST00000616619 62 ntBASIC3.49□□□□□ -1.85
LIG3P49916 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.49□□□□□ -1.85
LIG3P49916 U1.39-201ENST00000621562 146 ntBASIC3.49□□□□□ -1.85
LIG3P49916 MIR7515-201ENST00000637837 67 ntBASIC3.49□□□□□ -1.85
LIG3P49916 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.49□□□□□ -1.85
LIG3P49916 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.48□□□□□ -1.85
LIG3P49916 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
LIG3P49916 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LIG3P49916 MIR208A-201ENST00000362287 71 ntBASIC3.48□□□□□ -1.85
LIG3P49916 SNORD46.1-201ENST00000364139 104 ntBASIC3.48□□□□□ -1.85
LIG3P49916 RNA5SP72-201ENST00000364442 117 ntBASIC3.48□□□□□ -1.85
LIG3P49916 Y_RNA.341-201ENST00000365341 102 ntBASIC3.48□□□□□ -1.85
LIG3P49916 Y_RNA.456-201ENST00000384232 111 ntBASIC3.48□□□□□ -1.85
LIG3P49916 AC244505.4-201ENST00000434905 287 ntBASIC3.48□□□□□ -1.85
LIG3P49916 SSXP5-201ENST00000443473 287 ntBASIC3.48□□□□□ -1.85
LIG3P49916 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.48□□□□□ -1.85
LIG3P49916 AC091153.1-201ENST00000466297 402 ntBASIC3.48□□□□□ -1.85
LIG3P49916 RPL27AP5-201ENST00000469428 449 ntBASIC3.48□□□□□ -1.85
LIG3P49916 SNORA70.19-201ENST00000516717 90 ntBASIC3.48□□□□□ -1.85
LIG3P49916 SCARNA3-201ENST00000517097 143 ntBASIC3.48□□□□□ -1.85
LIG3P49916 AC104465.1-201ENST00000611365 139 ntBASIC3.48□□□□□ -1.85
LIG3P49916 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.48□□□□□ -1.85
LIG3P49916 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LIG3P49916 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
LIG3P49916 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
LIG3P49916 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.48□□□□□ -1.85
LIG3P49916 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.48□□□□□ -1.85
LIG3P49916 Z82209.1-201ENST00000422141 2135 ntBASIC3.47□□□□□ -1.85
LIG3P49916 Y_RNA.121-201ENST00000363309 113 ntBASIC3.47□□□□□ -1.85
LIG3P49916 Y_RNA.238-201ENST00000364441 102 ntBASIC3.47□□□□□ -1.85
LIG3P49916 RNY1P5-201ENST00000383890 115 ntBASIC3.47□□□□□ -1.85
LIG3P49916 MIR34B-201ENST00000385076 84 ntBASIC3.47□□□□□ -1.85
LIG3P49916 AL139095.1-201ENST00000404326 391 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U6atac.2-201ENST00000408644 118 ntBASIC3.47□□□□□ -1.85
LIG3P49916 RNU2-2P-201ENST00000410396 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.47□□□□□ -1.85
LIG3P49916 RPS20P10-201ENST00000451209 253 ntBASIC3.47□□□□□ -1.85
LIG3P49916 RNU7-57P-201ENST00000459540 60 ntBASIC3.47□□□□□ -1.85
LIG3P49916 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.47□□□□□ -1.85
LIG3P49916 AC109329.2-201ENST00000519658 482 ntBASIC3.47□□□□□ -1.85
LIG3P49916 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.47□□□□□ -1.85
LIG3P49916 AC018630.3-201ENST00000542637 96 ntBASIC3.47□□□□□ -1.85
LIG3P49916 MIR3144-201ENST00000579460 79 ntBASIC3.47□□□□□ -1.85
LIG3P49916 MIR3910-1-201ENST00000580936 111 ntBASIC3.47□□□□□ -1.85
LIG3P49916 AC105245.1-201ENST00000581934 244 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms