Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC108210.2-201ENST00000503681 201 ntBASIC1.92□□□□□ -2.1
LHX1P48742 Y_RNA.706-201ENST00000516933 99 ntBASIC1.92□□□□□ -2.1
LHX1P48742 AC134698.4-201ENST00000523451 826 ntBASIC1.92□□□□□ -2.1
LHX1P48742 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.92□□□□□ -2.1
LHX1P48742 RRN3P3-201ENST00000549207 578 ntBASIC1.92□□□□□ -2.1
LHX1P48742 MIR4753-201ENST00000585119 83 ntBASIC1.92□□□□□ -2.1
LHX1P48742 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.92□□□□□ -2.1
LHX1P48742 CYP2C61P-201ENST00000604072 290 ntBASIC1.92□□□□□ -2.1
LHX1P48742 AC016727.1-205ENST00000605437 569 ntBASIC1.92□□□□□ -2.1
LHX1P48742 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.92□□□□□ -2.1
LHX1P48742 CENPCP1-201ENST00000533085 2578 ntBASIC1.92□□□□□ -2.1
LHX1P48742 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.91□□□□□ -2.1
LHX1P48742 ZNF702P-202ENST00000434269 1966 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RNA5SP276-201ENST00000362580 94 ntBASIC1.91□□□□□ -2.1
LHX1P48742 Y_RNA.142-201ENST00000363491 102 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RNU6-137P-201ENST00000363680 108 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RNU6-245P-201ENST00000384020 107 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RNU4-14P-201ENST00000410858 122 ntBASIC1.91□□□□□ -2.1
LHX1P48742 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
LHX1P48742 AC096920.1-201ENST00000423991 241 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AL353997.1-201ENST00000432936 108 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RPL23AP50-201ENST00000434149 455 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RNU1-131P-201ENST00000458943 161 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RPS29P11-201ENST00000496507 171 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AL117351.2-201ENST00000513571 157 ntBASIC1.91□□□□□ -2.1
LHX1P48742 SNORA25.14-201ENST00000516481 132 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RNA5SP384-201ENST00000516615 116 ntBASIC1.91□□□□□ -2.1
LHX1P48742 RNU6-307P-201ENST00000516743 106 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AC105029.1-201ENST00000520250 669 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AL121579.1-201ENST00000555129 305 ntBASIC1.91□□□□□ -2.1
LHX1P48742 MIR4287-201ENST00000579398 78 ntBASIC1.91□□□□□ -2.1
LHX1P48742 MIR3935-201ENST00000583472 104 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AC005899.2-201ENST00000584353 90 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AC100812.1-201ENST00000607622 580 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AC005014.2-201ENST00000607795 599 ntBASIC1.91□□□□□ -2.1
LHX1P48742 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AC084768.2-201ENST00000622736 221 ntBASIC1.91□□□□□ -2.1
LHX1P48742 AL669831.3-213ENST00000636676 183 ntBASIC1.91□□□□□ -2.1
LHX1P48742 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
LHX1P48742 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.91□□□□□ -2.1
LHX1P48742 MIR340-201ENST00000362125 95 ntBASIC1.9□□□□□ -2.11
LHX1P48742 RNU6-873P-201ENST00000363833 107 ntBASIC1.9□□□□□ -2.11
LHX1P48742 Y_RNA.303-201ENST00000364998 94 ntBASIC1.9□□□□□ -2.11
LHX1P48742 Y_RNA.404-201ENST00000383978 102 ntBASIC1.9□□□□□ -2.11
LHX1P48742 RNU6-331P-201ENST00000384724 107 ntBASIC1.9□□□□□ -2.11
LHX1P48742 MIR17-201ENST00000385012 84 ntBASIC1.9□□□□□ -2.11
LHX1P48742 RNU6-700P-201ENST00000391043 107 ntBASIC1.9□□□□□ -2.11
LHX1P48742 RNU6-370P-201ENST00000411008 104 ntBASIC1.9□□□□□ -2.11
LHX1P48742 CYCSP49-201ENST00000420810 319 ntBASIC1.9□□□□□ -2.11
LHX1P48742 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
LHX1P48742 AL445305.1-201ENST00000432577 575 ntBASIC1.9□□□□□ -2.11
LHX1P48742 MTND2P29-201ENST00000438595 412 ntBASIC1.9□□□□□ -2.11
LHX1P48742 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.9□□□□□ -2.11
LHX1P48742 MTND4P18-201ENST00000447010 465 ntBASIC1.9□□□□□ -2.11
LHX1P48742 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.9□□□□□ -2.11
LHX1P48742 HMGN2P23-201ENST00000456759 269 ntBASIC1.9□□□□□ -2.11
LHX1P48742 AC010531.2-201ENST00000465012 153 ntBASIC1.9□□□□□ -2.11
LHX1P48742 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.9□□□□□ -2.11
LHX1P48742 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.9□□□□□ -2.11
LHX1P48742 MIR3169-201ENST00000578032 83 ntBASIC1.9□□□□□ -2.11
LHX1P48742 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.9□□□□□ -2.11
LHX1P48742 AP001094.1-201ENST00000579805 193 ntBASIC1.9□□□□□ -2.11
LHX1P48742 MIR548S-201ENST00000581352 82 ntBASIC1.9□□□□□ -2.11
LHX1P48742 AL355802.3-201ENST00000607571 545 ntBASIC1.9□□□□□ -2.11
LHX1P48742 uc_338.20-201ENST00000621563 178 ntBASIC1.9□□□□□ -2.11
LHX1P48742 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
LHX1P48742 AC008555.8-201ENST00000623602 2168 ntBASIC1.89□□□□□ -2.11
LHX1P48742 RNY1P16-201ENST00000363063 111 ntBASIC1.89□□□□□ -2.11
LHX1P48742 RNU6-280P-201ENST00000364145 104 ntBASIC1.89□□□□□ -2.11
LHX1P48742 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
LHX1P48742 RNU6-159P-201ENST00000391080 106 ntBASIC1.89□□□□□ -2.11
LHX1P48742 AL512604.1-201ENST00000404812 257 ntBASIC1.89□□□□□ -2.11
LHX1P48742 SUMO2P12-201ENST00000405924 140 ntBASIC1.89□□□□□ -2.11
LHX1P48742 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.89□□□□□ -2.11
LHX1P48742 AC114982.1-201ENST00000469402 321 ntBASIC1.89□□□□□ -2.11
LHX1P48742 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.89□□□□□ -2.11
LHX1P48742 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.89□□□□□ -2.11
LHX1P48742 SCARNA16.2-201ENST00000516520 172 ntBASIC1.89□□□□□ -2.11
LHX1P48742 RNU6-344P-201ENST00000516635 111 ntBASIC1.89□□□□□ -2.11
LHX1P48742 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.89□□□□□ -2.11
LHX1P48742 UBL5P4-201ENST00000562584 236 ntBASIC1.89□□□□□ -2.11
LHX1P48742 MIR3124-201ENST00000582636 67 ntBASIC1.89□□□□□ -2.11
LHX1P48742 AC113139.1-201ENST00000605049 239 ntBASIC1.89□□□□□ -2.11
LHX1P48742 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
LHX1P48742 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.88□□□□□ -2.11
LHX1P48742 AC245060.5-201ENST00000610778 3293 ntBASIC1.88□□□□□ -2.11
LHX1P48742 RNU5F-3P-201ENST00000363767 117 ntBASIC1.88□□□□□ -2.11
LHX1P48742 RNU6-1305P-201ENST00000364353 104 ntBASIC1.88□□□□□ -2.11
LHX1P48742 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.88□□□□□ -2.11
LHX1P48742 RNU6-418P-201ENST00000384035 107 ntBASIC1.88□□□□□ -2.11
LHX1P48742 Y_RNA.474-201ENST00000384341 102 ntBASIC1.88□□□□□ -2.11
LHX1P48742 RNA5SP489-201ENST00000410986 109 ntBASIC1.88□□□□□ -2.11
LHX1P48742 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.88□□□□□ -2.11
LHX1P48742 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.88□□□□□ -2.11
LHX1P48742 MTCYBP10-201ENST00000424905 650 ntBASIC1.88□□□□□ -2.11
LHX1P48742 MTND3P23-201ENST00000431980 347 ntBASIC1.88□□□□□ -2.11
LHX1P48742 MTCO1P44-201ENST00000441935 243 ntBASIC1.88□□□□□ -2.11
LHX1P48742 AL357134.1-201ENST00000445848 426 ntBASIC1.88□□□□□ -2.11
LHX1P48742 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.88□□□□□ -2.11
LHX1P48742 AP000870.1-201ENST00000472927 406 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms