Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.34□□□□□ -2.19
SHMT2P34897 AC060773.1-201ENST00000421698 310 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 UBE2V1P8-201ENST00000437166 265 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 PCMTD1P1-201ENST00000455560 355 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 RPS29P23-201ENST00000458635 123 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 snoU13.30-201ENST00000458951 104 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 MTCO2P30-201ENST00000503662 364 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 RNU6-1041P-201ENST00000516254 102 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 RNA5SP437-201ENST00000517249 129 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.34□□□□□ -2.19
SHMT2P34897 RRN3P3-201ENST00000549207 578 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.34□□□□□ -2.19
SHMT2P34897 SUB1P3-201ENST00000564581 315 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.34□□□□□ -2.19
SHMT2P34897 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 AL359697.1-201ENST00000624879 587 ntBASIC1.34□□□□□ -2.19
SHMT2P34897 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.34□□□□□ -2.2
SHMT2P34897 MTND4P5-201ENST00000435821 1374 ntBASIC1.34□□□□□ -2.2
SHMT2P34897 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.33□□□□□ -2.2
SHMT2P34897 Y_RNA.3-201ENST00000362331 103 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 Y_RNA.9-201ENST00000362354 101 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 RNU6-1235P-201ENST00000384559 107 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 MIR517A-201ENST00000385001 87 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
SHMT2P34897 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.33□□□□□ -2.2
SHMT2P34897 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 Z82205.1-201ENST00000428456 297 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.33□□□□□ -2.2
SHMT2P34897 NFU1P2-201ENST00000448700 469 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 AC016717.1-201ENST00000448918 286 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.33□□□□□ -2.2
SHMT2P34897 AC112492.4-201ENST00000456549 352 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 RNU6-498P-201ENST00000459468 107 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 MTCYBP18-201ENST00000501056 747 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 AC025465.3-201ENST00000510570 311 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 AC011406.1-201ENST00000512440 370 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 MTND1P5-201ENST00000517906 940 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.33□□□□□ -2.2
SHMT2P34897 MIR3942-201ENST00000585264 109 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 AC012557.2-201ENST00000605919 418 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 snoU13.31-201ENST00000607291 104 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 AC137590.2-201ENST00000619709 240 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 AC008873.1-201ENST00000625051 138 ntBASIC1.33□□□□□ -2.2
SHMT2P34897 ZNF204P-201ENST00000416749 2397 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 SNORA7.1-201ENST00000363750 139 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 RNU1-96P-201ENST00000364163 162 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 RNU6-203P-201ENST00000384038 104 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 Y_RNA.450-201ENST00000384198 113 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 RNU6-975P-201ENST00000384296 105 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 Y_RNA.516-201ENST00000384541 124 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 SNORD116-4-201ENST00000384733 96 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 MIR586-201ENST00000385035 97 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 RNU6-1148P-201ENST00000410992 104 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.32□□□□□ -2.2
SHMT2P34897 Z82188.1-201ENST00000436709 154 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 AL353572.1-201ENST00000442490 417 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 RNA5SP384-201ENST00000516615 116 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 AC068338.1-201ENST00000565567 176 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 POLR3GP2-201ENST00000588366 668 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 MIR8074-201ENST00000615081 81 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 AC245060.5-201ENST00000610778 3293 ntBASIC1.32□□□□□ -2.2
SHMT2P34897 Y_RNA.89-201ENST00000363031 102 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 SNORD115-8-201ENST00000363856 82 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 SNORD115-32-201ENST00000364079 82 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 SNORA63D-201ENST00000364359 132 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 RNU6-534P-201ENST00000364877 106 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 SNORD115-38-201ENST00000365037 82 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 SNORA67.2-201ENST00000384300 149 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 MIR520A-201ENST00000384862 85 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 MIR150-201ENST00000385048 84 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 FGF7P8-201ENST00000402994 292 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 RNA5SP504-201ENST00000410676 117 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 RNU6-373P-201ENST00000411247 98 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.31□□□□□ -2.2
SHMT2P34897 AC114982.1-201ENST00000469402 321 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 AL163540.1-201ENST00000485382 386 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 RNU6-1314P-201ENST00000517139 104 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.31□□□□□ -2.2
SHMT2P34897 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.31□□□□□ -2.2
SHMT2P34897 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.31□□□□□ -2.2
SHMT2P34897 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.31□□□□□ -2.2
SHMT2P34897 SNRPGP20-201ENST00000604477 205 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.31□□□□□ -2.2
SHMT2P34897 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 AC126177.8-201ENST00000618339 1015 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 MIR338-201ENST00000636369 67 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.31□□□□□ -2.2
SHMT2P34897 AC010615.1-201ENST00000594254 1764 ntBASIC1.31□□□□□ -2.2
SHMT2P34897 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.31□□□□□ -2.2
SHMT2P34897 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SHMT2P34897 RNU6-1019P-201ENST00000364424 107 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 RNU4-9P-201ENST00000364951 139 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 SNORD116-11-201ENST00000383882 92 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 MIR548B-201ENST00000385247 97 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 Y_RNA.595-201ENST00000410403 105 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 CST2P1-201ENST00000425770 87 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 HSPE1P9-201ENST00000440046 311 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.3□□□□□ -2.2
SHMT2P34897 RPS29P29-201ENST00000456396 171 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms