Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CIITAP33076 Y_RNA.26-201ENST00000362539 101 ntBASIC2.57□□□□□ -2
CIITAP33076 RNU6-137P-201ENST00000363680 108 ntBASIC2.57□□□□□ -2
CIITAP33076 Y_RNA.214-201ENST00000364201 112 ntBASIC2.57□□□□□ -2
CIITAP33076 SNORA67.1-201ENST00000364749 141 ntBASIC2.57□□□□□ -2
CIITAP33076 RNU6-281P-201ENST00000384212 103 ntBASIC2.57□□□□□ -2
CIITAP33076 Y_RNA.458-201ENST00000384240 102 ntBASIC2.57□□□□□ -2
CIITAP33076 RNY3P4-201ENST00000384428 101 ntBASIC2.57□□□□□ -2
CIITAP33076 SNORA51.11-201ENST00000384442 131 ntBASIC2.57□□□□□ -2
CIITAP33076 RNU6-1072P-201ENST00000384703 107 ntBASIC2.57□□□□□ -2
CIITAP33076 RNU6-443P-201ENST00000384780 107 ntBASIC2.57□□□□□ -2
CIITAP33076 MTCO3P19-201ENST00000415864 321 ntBASIC2.57□□□□□ -2
CIITAP33076 ELOCP20-201ENST00000422460 345 ntBASIC2.57□□□□□ -2
CIITAP33076 DPH3P2-201ENST00000422618 250 ntBASIC2.57□□□□□ -2
CIITAP33076 AL356320.1-201ENST00000429616 163 ntBASIC2.57□□□□□ -2
CIITAP33076 USP9YP16-201ENST00000430287 407 ntBASIC2.57□□□□□ -2
CIITAP33076 RPEP5-201ENST00000441137 268 ntBASIC2.57□□□□□ -2
CIITAP33076 USP9YP23-201ENST00000455085 407 ntBASIC2.57□□□□□ -2
CIITAP33076 AC007215.1-201ENST00000464893 276 ntBASIC2.57□□□□□ -2
CIITAP33076 UBL5P3-201ENST00000475112 231 ntBASIC2.57□□□□□ -2
CIITAP33076 MRPS35P2-201ENST00000508242 191 ntBASIC2.57□□□□□ -2
CIITAP33076 RNU6-1114P-201ENST00000516022 107 ntBASIC2.57□□□□□ -2
CIITAP33076 RNU2-53P-201ENST00000516257 147 ntBASIC2.57□□□□□ -2
CIITAP33076 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.57□□□□□ -2
CIITAP33076 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.57□□□□□ -2
CIITAP33076 AC090517.1-201ENST00000569307 266 ntBASIC2.57□□□□□ -2
CIITAP33076 U6.92-201ENST00000636464 89 ntBASIC2.57□□□□□ -2
CIITAP33076 ZNF658B-202ENST00000615961 3375 ntBASIC2.57□□□□□ -2
CIITAP33076 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
CIITAP33076 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CIITAP33076 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.56□□□□□ -2
CIITAP33076 Y_RNA.47-201ENST00000362697 108 ntBASIC2.56□□□□□ -2
CIITAP33076 RNU6-655P-201ENST00000362858 107 ntBASIC2.56□□□□□ -2
CIITAP33076 RNU6-463P-201ENST00000384340 107 ntBASIC2.56□□□□□ -2
CIITAP33076 Y_RNA.512-201ENST00000384518 102 ntBASIC2.56□□□□□ -2
CIITAP33076 AC007064.1-201ENST00000412238 351 ntBASIC2.56□□□□□ -2
CIITAP33076 Z98742.3-201ENST00000418637 326 ntBASIC2.56□□□□□ -2
CIITAP33076 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.56□□□□□ -2
CIITAP33076 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.56□□□□□ -2
CIITAP33076 CR769767.1-201ENST00000436337 346 ntBASIC2.56□□□□□ -2
CIITAP33076 AC073910.1-201ENST00000445047 438 ntBASIC2.56□□□□□ -2
CIITAP33076 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.56□□□□□ -2
CIITAP33076 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.56□□□□□ -2
CIITAP33076 RNU6-1012P-201ENST00000516606 109 ntBASIC2.56□□□□□ -2
CIITAP33076 MIR2355-201ENST00000517199 87 ntBASIC2.56□□□□□ -2
CIITAP33076 AC034114.1-201ENST00000520293 285 ntBASIC2.56□□□□□ -2
CIITAP33076 MIR4503-201ENST00000582187 83 ntBASIC2.56□□□□□ -2
CIITAP33076 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.56□□□□□ -2
CIITAP33076 PRR13P7-201ENST00000605538 430 ntBASIC2.56□□□□□ -2
CIITAP33076 AL137847.3-201ENST00000611521 109 ntBASIC2.56□□□□□ -2
CIITAP33076 PCGEM1.1-201ENST00000613431 131 ntBASIC2.56□□□□□ -2
CIITAP33076 AC137590.2-201ENST00000619709 240 ntBASIC2.56□□□□□ -2
CIITAP33076 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
CIITAP33076 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CIITAP33076 snoU2_19.1-201ENST00000362361 80 ntBASIC2.55□□□□□ -2
CIITAP33076 RNA5SP361-201ENST00000362686 118 ntBASIC2.55□□□□□ -2
CIITAP33076 Y_RNA.210-201ENST00000364161 110 ntBASIC2.55□□□□□ -2
CIITAP33076 RNU6-806P-201ENST00000365147 105 ntBASIC2.55□□□□□ -2
CIITAP33076 RNU1-51P-201ENST00000365345 176 ntBASIC2.55□□□□□ -2
CIITAP33076 Y_RNA.574-201ENST00000384766 95 ntBASIC2.55□□□□□ -2
CIITAP33076 MIR628-201ENST00000385229 95 ntBASIC2.55□□□□□ -2
CIITAP33076 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.55□□□□□ -2
CIITAP33076 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.55□□□□□ -2
CIITAP33076 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.55□□□□□ -2
CIITAP33076 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.55□□□□□ -2
CIITAP33076 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.55□□□□□ -2
CIITAP33076 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.55□□□□□ -2
CIITAP33076 RNU6-635P-201ENST00000516651 102 ntBASIC2.55□□□□□ -2
CIITAP33076 AC022868.1-201ENST00000517767 391 ntBASIC2.55□□□□□ -2
CIITAP33076 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.55□□□□□ -2
CIITAP33076 MIR3923-201ENST00000579521 83 ntBASIC2.55□□□□□ -2
CIITAP33076 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.55□□□□□ -2
CIITAP33076 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.55□□□□□ -2
CIITAP33076 7SK.10-201ENST00000621414 298 ntBASIC2.55□□□□□ -2
CIITAP33076 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.55□□□□□ -2
CIITAP33076 Z82209.1-201ENST00000422141 2135 ntBASIC2.54□□□□□ -2
CIITAP33076 RNU6-1159P-201ENST00000362933 107 ntBASIC2.54□□□□□ -2
CIITAP33076 Y_RNA.105-201ENST00000363182 111 ntBASIC2.54□□□□□ -2
CIITAP33076 Y_RNA.222-201ENST00000364264 102 ntBASIC2.54□□□□□ -2
CIITAP33076 RNU4-50P-201ENST00000364361 141 ntBASIC2.54□□□□□ -2
CIITAP33076 SNORA63.7-201ENST00000365579 123 ntBASIC2.54□□□□□ -2
CIITAP33076 MIR329-1-201ENST00000385028 80 ntBASIC2.54□□□□□ -2
CIITAP33076 MIR221-201ENST00000385135 110 ntBASIC2.54□□□□□ -2
CIITAP33076 RNU6-1093P-201ENST00000391194 107 ntBASIC2.54□□□□□ -2
CIITAP33076 AL135786.1-201ENST00000415892 214 ntBASIC2.54□□□□□ -2
CIITAP33076 IPO7P1-201ENST00000442031 636 ntBASIC2.54□□□□□ -2
CIITAP33076 HMGB3P3-201ENST00000510526 400 ntBASIC2.54□□□□□ -2
CIITAP33076 AC067942.3-201ENST00000512025 362 ntBASIC2.54□□□□□ -2
CIITAP33076 RNU1-41P-201ENST00000516161 162 ntBASIC2.54□□□□□ -2
CIITAP33076 RNU6-397P-201ENST00000516226 104 ntBASIC2.54□□□□□ -2
CIITAP33076 RNU1-48P-201ENST00000516400 162 ntBASIC2.54□□□□□ -2
CIITAP33076 RNU6-567P-201ENST00000516746 107 ntBASIC2.54□□□□□ -2
CIITAP33076 RNU6-897P-201ENST00000517135 105 ntBASIC2.54□□□□□ -2
CIITAP33076 RNA5SP402-201ENST00000517148 110 ntBASIC2.54□□□□□ -2
CIITAP33076 DEFB131C-201ENST00000528817 165 ntBASIC2.54□□□□□ -2
CIITAP33076 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.54□□□□□ -2
CIITAP33076 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.54□□□□□ -2
CIITAP33076 AL390123.1-201ENST00000603216 237 ntBASIC2.54□□□□□ -2
CIITAP33076 AC009831.4-201ENST00000620744 325 ntBASIC2.54□□□□□ -2
CIITAP33076 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms