Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU6-321P-201ENST00000410912 106 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC9P31274 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC9P31274 CBX3P6-201ENST00000430257 527 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 RNU7-87P-201ENST00000459343 62 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 AC107032.1-201ENST00000485945 480 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 RPL17P19-201ENST00000489069 552 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC9P31274 SNORA4.4-201ENST00000515921 135 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 Y_RNA.673-201ENST00000516306 88 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 SNORA31.15-201ENST00000516771 132 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 RNU6-667P-201ENST00000517186 102 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 AC004584.2-201ENST00000570407 410 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 MIR4781-201ENST00000585250 76 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 AL049779.4-201ENST00000604500 156 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 RMST_6.1-201ENST00000611980 203 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 MIR1244-1-201ENST00000612829 85 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.27□□□□□ -2.05
HOXC9P31274 MIR1244-3-201ENST00000635744 85 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 MIR1244-2-201ENST00000636449 85 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 MIR1244-4-202ENST00000636813 85 ntBASIC2.27□□□□□ -2.05
HOXC9P31274 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXC9P31274 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXC9P31274 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
HOXC9P31274 RNU6-222P-201ENST00000362438 107 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 Y_RNA.146-201ENST00000363549 102 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 SNORD115-32-201ENST00000364079 82 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 Y_RNA.319-201ENST00000365138 92 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 SNORA25B-201ENST00000365507 128 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 SNORA18.2-201ENST00000383865 132 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 RPS26P42-201ENST00000413485 326 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.26□□□□□ -2.05
HOXC9P31274 AF228730.4-201ENST00000421457 183 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 MTCYBP10-201ENST00000424905 650 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXC9P31274 AC018868.1-201ENST00000491307 315 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 AC105758.1-201ENST00000506038 399 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXC9P31274 RNU6-470P-201ENST00000515954 104 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 AC022616.8-201ENST00000533569 253 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 AC104581.2-201ENST00000572227 430 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 MIR5701-3-201ENST00000578890 82 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 MIR5701-1-201ENST00000585138 82 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 AC100812.1-201ENST00000607622 580 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 MIR5701-2-201ENST00000615634 82 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 U4atac.1-201ENST00000618345 95 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 MIR1248-201ENST00000629190 106 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.26□□□□□ -2.05
HOXC9P31274 AC006026.1-201ENST00000444025 1803 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 MTND5P10-201ENST00000603719 1809 ntBASIC2.26□□□□□ -2.05
HOXC9P31274 ZNF204P-201ENST00000416749 2397 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.25□□□□□ -2.05
HOXC9P31274 Y_RNA.187-201ENST00000363918 113 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 RNU6-26P-201ENST00000383985 107 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 Y_RNA.535-201ENST00000384612 99 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 AC007098.1-201ENST00000420122 367 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 AC011753.1-201ENST00000451001 220 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 AP000870.1-201ENST00000472927 406 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 AC018630.3-201ENST00000542637 96 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXC9P31274 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXC9P31274 AL050343.2-201ENST00000607338 280 ntBASIC2.25□□□□□ -2.05
HOXC9P31274 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
HOXC9P31274 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
HOXC9P31274 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
HOXC9P31274 RNU6-874P-201ENST00000362390 105 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 Y_RNA.106-201ENST00000363189 100 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 RNU6-1040P-201ENST00000383974 107 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 RNU6-17P-201ENST00000384245 107 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 RNU6-18P-201ENST00000384527 107 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 RNU7-152P-201ENST00000458982 64 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 AC027575.1-201ENST00000481064 460 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 RNU5F-4P-201ENST00000516581 114 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 RNU6-58P-201ENST00000517143 103 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.24□□□□□ -2.05
HOXC9P31274 DEFB131C-201ENST00000528817 165 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.24□□□□□ -2.05
HOXC9P31274 AC027288.2-201ENST00000553028 243 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.24□□□□□ -2.05
HOXC9P31274 UBL5P4-201ENST00000562584 236 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXC9P31274 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXC9P31274 AC245884.12-201ENST00000615364 59 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 AC005562.2-201ENST00000618264 111 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 AC090574.1-201ENST00000623186 233 ntBASIC2.24□□□□□ -2.05
HOXC9P31274 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXC9P31274 RNU6-234P-201ENST00000365229 104 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 MIR559-201ENST00000385188 96 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 MIR190B-201ENST00000401119 79 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 MRPS18CP6-201ENST00000423587 223 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 USP9YP16-201ENST00000430287 407 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXC9P31274 AC004386.2-201ENST00000441858 148 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 USP9YP23-201ENST00000455085 407 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 RNU7-95P-201ENST00000459222 64 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXC9P31274 RNU6-1098P-201ENST00000516772 96 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 RNU6-699P-201ENST00000517081 110 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXC9P31274 DNAJC19P9-201ENST00000555084 351 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms