Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL136360.1-201ENST00000503377 1900 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HOXD3P31249 RNU1-62P-201ENST00000362599 164 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 SNORD32B-201ENST00000364460 84 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 Y_RNA.462-201ENST00000384268 102 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXD3P31249 RAB28P5-201ENST00000427490 651 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 AL139132.1-201ENST00000431587 344 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 RPL39P38-201ENST00000467018 153 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXD3P31249 HMGB3P17-201ENST00000504195 649 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 RNA5SP367-201ENST00000516557 118 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 RNU6-1098P-201ENST00000516772 96 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 SCARNA3-201ENST00000517097 143 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 AC107016.2-201ENST00000547968 190 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 AC005176.2-201ENST00000596933 147 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 AC011373.1-201ENST00000607270 237 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 AC004467.1-201ENST00000615678 330 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 AC091932.3-201ENST00000624223 323 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 U6.104-201ENST00000637979 90 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
HOXD3P31249 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXD3P31249 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.28□□□□□ -2.04
HOXD3P31249 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXD3P31249 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
HOXD3P31249 SNORD81.1-201ENST00000363064 77 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 SNORD27-201ENST00000363981 72 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 SNORA67.2-201ENST00000384300 149 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 Y_RNA.518-201ENST00000384552 113 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 MIR320B2-201ENST00000408479 138 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 RNU5A-5P-201ENST00000411054 116 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXD3P31249 AL135938.1-201ENST00000443141 297 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 UQCRHP3-201ENST00000451503 251 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 RN7SL633P-201ENST00000488974 297 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXD3P31249 SEPT14P8-201ENST00000508026 178 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 RNU6-107P-201ENST00000516643 102 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 AC027176.1-201ENST00000560204 514 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 MIR4319-201ENST00000577285 85 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 AC007318.2-201ENST00000620999 243 ntBASIC2.28□□□□□ -2.04
HOXD3P31249 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXD3P31249 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
HOXD3P31249 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
HOXD3P31249 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD3P31249 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD3P31249 SNORA9.2-201ENST00000365361 133 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 Y_RNA.446-201ENST00000384178 104 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 Y_RNA.489-201ENST00000384410 101 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 Y_RNA.539-201ENST00000384635 107 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 SNORA46-201ENST00000384762 135 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 AL603910.2-201ENST00000407268 136 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXD3P31249 MICF-203ENST00000432679 129 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXD3P31249 AC083906.5-201ENST00000503722 328 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 AC074133.1-201ENST00000515696 183 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 RN7SKP132-201ENST00000516001 208 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 RNU6-965P-201ENST00000516721 96 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 RNU6-794P-201ENST00000517261 64 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 MIR4643-201ENST00000577473 78 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 MIR3117-201ENST00000584034 78 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 AC008749.1-201ENST00000597650 306 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 SNORD113-5-201ENST00000607261 78 ntBASIC2.27□□□□□ -2.05
HOXD3P31249 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.27□□□□□ -2.05
HOXD3P31249 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD3P31249 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXD3P31249 Z82195.2-201ENST00000612348 18351 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXD3P31249 MIR335-201ENST00000362173 94 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-545P-201ENST00000362681 104 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 Y_RNA.54-201ENST00000362766 105 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU4-90P-201ENST00000362773 141 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU5F-3P-201ENST00000363767 117 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-461P-201ENST00000364195 107 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-454P-201ENST00000364292 107 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 Y_RNA.277-201ENST00000364754 102 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 SNORA20.1-201ENST00000364790 130 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 Y_RNA.331-201ENST00000365267 102 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-851P-201ENST00000384565 107 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-21P-201ENST00000384710 107 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 U6atac.2-201ENST00000408644 118 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-1199P-201ENST00000411249 104 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC139712.2-201ENST00000424302 339 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC105272.1-201ENST00000438604 198 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AL445687.1-201ENST00000439946 251 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC009237.7-201ENST00000447357 229 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RPS23P5-201ENST00000495419 428 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-1023P-201ENST00000516137 106 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-111P-201ENST00000517179 105 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 RNU6-586P-201ENST00000517265 104 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC245166.1-201ENST00000521012 253 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC026470.2-201ENST00000561492 181 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXD3P31249 AC105245.1-201ENST00000581934 244 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC090616.3-201ENST00000582184 217 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.26□□□□□ -2.05
HOXD3P31249 ELOCP29-201ENST00000588193 334 ntBASIC2.26□□□□□ -2.05
HOXD3P31249 AC022441.3-201ENST00000605737 136 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms