Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.51□□□□□ -2.17
SDC1P18827 MIR4273-201ENST00000582824 84 ntBASIC1.51□□□□□ -2.17
SDC1P18827 AC010900.2-201ENST00000604508 210 ntBASIC1.51□□□□□ -2.17
SDC1P18827 MIR502-201ENST00000606349 86 ntBASIC1.51□□□□□ -2.17
SDC1P18827 AC103810.8-201ENST00000607347 118 ntBASIC1.51□□□□□ -2.17
SDC1P18827 AC005858.4-201ENST00000623191 700 ntBASIC1.51□□□□□ -2.17
SDC1P18827 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SDC1P18827 ZNF299P-201ENST00000406845 1804 ntBASIC1.5□□□□□ -2.17
SDC1P18827 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SDC1P18827 Y_RNA.48-201ENST00000362710 103 ntBASIC1.5□□□□□ -2.17
SDC1P18827 Y_RNA.72-201ENST00000362894 103 ntBASIC1.5□□□□□ -2.17
SDC1P18827 RNU6-1305P-201ENST00000364353 104 ntBASIC1.5□□□□□ -2.17
SDC1P18827 RNU6-17P-201ENST00000384245 107 ntBASIC1.5□□□□□ -2.17
SDC1P18827 RNU6-975P-201ENST00000384296 105 ntBASIC1.5□□□□□ -2.17
SDC1P18827 RNU6-18P-201ENST00000384527 107 ntBASIC1.5□□□□□ -2.17
SDC1P18827 MIR586-201ENST00000385035 97 ntBASIC1.5□□□□□ -2.17
SDC1P18827 MIR504-201ENST00000385065 83 ntBASIC1.5□□□□□ -2.17
SDC1P18827 AL033519.2-201ENST00000403958 392 ntBASIC1.5□□□□□ -2.17
SDC1P18827 AC060773.1-201ENST00000421698 310 ntBASIC1.5□□□□□ -2.17
SDC1P18827 MTCO3P29-201ENST00000432119 779 ntBASIC1.5□□□□□ -2.17
SDC1P18827 AC026782.1-201ENST00000512952 449 ntBASIC1.5□□□□□ -2.17
SDC1P18827 RNU6-1041P-201ENST00000516254 102 ntBASIC1.5□□□□□ -2.17
SDC1P18827 RNU6-344P-201ENST00000516635 111 ntBASIC1.5□□□□□ -2.17
SDC1P18827 RNU6-295P-201ENST00000516901 104 ntBASIC1.5□□□□□ -2.17
SDC1P18827 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.5□□□□□ -2.17
SDC1P18827 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.5□□□□□ -2.17
SDC1P18827 AC011712.1-201ENST00000588959 234 ntBASIC1.5□□□□□ -2.17
SDC1P18827 AC011494.1-201ENST00000596454 237 ntBASIC1.5□□□□□ -2.17
SDC1P18827 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.5□□□□□ -2.17
SDC1P18827 AL359697.1-201ENST00000624879 587 ntBASIC1.5□□□□□ -2.17
SDC1P18827 AC008873.1-201ENST00000625051 138 ntBASIC1.5□□□□□ -2.17
SDC1P18827 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.5□□□□□ -2.17
SDC1P18827 MTND4P12-201ENST00000498999 1377 ntBASIC1.49□□□□□ -2.17
SDC1P18827 CASC19-280ENST00000642102 1351 ntBASIC1.49□□□□□ -2.17
SDC1P18827 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SDC1P18827 RNU6-862P-201ENST00000362804 105 ntBASIC1.49□□□□□ -2.17
SDC1P18827 RNU6-873P-201ENST00000363833 107 ntBASIC1.49□□□□□ -2.17
SDC1P18827 RNU6-595P-201ENST00000363944 107 ntBASIC1.49□□□□□ -2.17
SDC1P18827 RNU6-245P-201ENST00000384020 107 ntBASIC1.49□□□□□ -2.17
SDC1P18827 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
SDC1P18827 AL117342.1-201ENST00000404861 406 ntBASIC1.49□□□□□ -2.17
SDC1P18827 MIR320B2-201ENST00000408479 138 ntBASIC1.49□□□□□ -2.17
SDC1P18827 RPS3AP52-201ENST00000435639 297 ntBASIC1.49□□□□□ -2.17
SDC1P18827 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.49□□□□□ -2.17
SDC1P18827 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.49□□□□□ -2.17
SDC1P18827 YWHAEP4-201ENST00000505390 198 ntBASIC1.49□□□□□ -2.17
SDC1P18827 RNU2-34P-201ENST00000516534 121 ntBASIC1.49□□□□□ -2.17
SDC1P18827 RNU6-1016P-201ENST00000516689 94 ntBASIC1.49□□□□□ -2.17
SDC1P18827 SNORA31.17-201ENST00000516953 127 ntBASIC1.49□□□□□ -2.17
SDC1P18827 RNU1-117P-201ENST00000517041 158 ntBASIC1.49□□□□□ -2.17
SDC1P18827 CBX3P8-201ENST00000532412 525 ntBASIC1.49□□□□□ -2.17
SDC1P18827 UBL5P4-201ENST00000562584 236 ntBASIC1.49□□□□□ -2.17
SDC1P18827 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.49□□□□□ -2.17
SDC1P18827 AC018462.2-201ENST00000605375 395 ntBASIC1.49□□□□□ -2.17
SDC1P18827 uc_338.5-201ENST00000611839 155 ntBASIC1.49□□□□□ -2.17
SDC1P18827 AC006026.1-201ENST00000444025 1803 ntBASIC1.49□□□□□ -2.17
SDC1P18827 RNU6-112P-201ENST00000363599 104 ntBASIC1.48□□□□□ -2.17
SDC1P18827 Y_RNA.184-201ENST00000363884 108 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RNU4-42P-201ENST00000364738 142 ntBASIC1.48□□□□□ -2.17
SDC1P18827 Y_RNA.339-201ENST00000365325 102 ntBASIC1.48□□□□□ -2.17
SDC1P18827 Y_RNA.405-201ENST00000383979 100 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RNU6-439P-201ENST00000384188 106 ntBASIC1.48□□□□□ -2.17
SDC1P18827 Y_RNA.451-201ENST00000384200 100 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RNU6-1235P-201ENST00000384559 107 ntBASIC1.48□□□□□ -2.17
SDC1P18827 Y_RNA.524-201ENST00000384564 100 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RNU6-296P-201ENST00000384608 107 ntBASIC1.48□□□□□ -2.17
SDC1P18827 Y_RNA.561-201ENST00000384694 100 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RNU6-997P-201ENST00000384725 107 ntBASIC1.48□□□□□ -2.17
SDC1P18827 MIR320A-201ENST00000385302 82 ntBASIC1.48□□□□□ -2.17
SDC1P18827 NCOR1P3-201ENST00000420479 303 ntBASIC1.48□□□□□ -2.17
SDC1P18827 MTND1P2-201ENST00000430604 821 ntBASIC1.48□□□□□ -2.17
SDC1P18827 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.48□□□□□ -2.17
SDC1P18827 HSPE1P21-201ENST00000438283 308 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RNU6-498P-201ENST00000459468 107 ntBASIC1.48□□□□□ -2.17
SDC1P18827 AC114982.1-201ENST00000469402 321 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RN7SL429P-201ENST00000479090 223 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RN7SL489P-201ENST00000486185 223 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RN7SL327P-201ENST00000488659 223 ntBASIC1.48□□□□□ -2.17
SDC1P18827 AC011406.1-201ENST00000512440 370 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RNU6-948P-201ENST00000516374 107 ntBASIC1.48□□□□□ -2.17
SDC1P18827 SNORA25.14-201ENST00000516481 132 ntBASIC1.48□□□□□ -2.17
SDC1P18827 SNORA25.15-201ENST00000516487 89 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RNA5SP384-201ENST00000516615 116 ntBASIC1.48□□□□□ -2.17
SDC1P18827 AL590705.4-201ENST00000532209 134 ntBASIC1.48□□□□□ -2.17
SDC1P18827 GNAI2P1-201ENST00000541815 315 ntBASIC1.48□□□□□ -2.17
SDC1P18827 BX248123.2-201ENST00000606318 124 ntBASIC1.48□□□□□ -2.17
SDC1P18827 AC122108.2-201ENST00000611946 526 ntBASIC1.48□□□□□ -2.17
SDC1P18827 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.48□□□□□ -2.17
SDC1P18827 RN7SL853P-201ENST00000617250 223 ntBASIC1.48□□□□□ -2.17
SDC1P18827 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.48□□□□□ -2.17
SDC1P18827 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
SDC1P18827 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
SDC1P18827 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SDC1P18827 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
SDC1P18827 RNU6-159P-201ENST00000391080 106 ntBASIC1.47□□□□□ -2.17
SDC1P18827 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SDC1P18827 Y_RNA.594-201ENST00000410373 140 ntBASIC1.47□□□□□ -2.17
SDC1P18827 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.47□□□□□ -2.17
SDC1P18827 RPL21P111-201ENST00000418453 477 ntBASIC1.47□□□□□ -2.17
SDC1P18827 AC245047.4-201ENST00000433189 144 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms