Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RNU6-1304P-201ENST00000411374 106 ntBASIC-1.03□□□□□ -2.57
HMGA1P17096 RPL39P6-201ENST00000448289 150 ntBASIC-1.03□□□□□ -2.57
HMGA1P17096 SNORA31.3-201ENST00000516029 96 ntBASIC-1.03□□□□□ -2.57
HMGA1P17096 RNU2-34P-201ENST00000516534 121 ntBASIC-1.03□□□□□ -2.57
HMGA1P17096 AC115990.1-201ENST00000526957 301 ntBASIC-1.03□□□□□ -2.57
HMGA1P17096 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-1.03□□□□□ -2.57
HMGA1P17096 AC004584.2-201ENST00000570407 410 ntBASIC-1.03□□□□□ -2.57
HMGA1P17096 BX322639.1-202ENST00000423987 2213 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 RNU6-10P-201ENST00000384036 107 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 RNU6-1207P-201ENST00000384343 107 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 RNU6-15P-201ENST00000384534 107 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 SNORA26-201ENST00000391286 122 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 CALM2P4-201ENST00000430810 426 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 SPINT5P-201ENST00000448174 155 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 SCARNA18-201ENST00000459004 134 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-1.04□□□□□ -2.58
HMGA1P17096 RNY1P9-201ENST00000532431 109 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 MIR4324-201ENST00000584846 72 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 AL162726.3-218ENST00000636401 95 ntBASIC-1.04□□□□□ -2.58
HMGA1P17096 SNORD115-41-201ENST00000363608 82 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 RNU6-652P-201ENST00000365488 107 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 RNU6-72P-201ENST00000384285 79 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-1.05□□□□□ -2.58
HMGA1P17096 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC-1.05□□□□□ -2.58
HMGA1P17096 SNORD57-201ENST00000448188 72 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 AC005042.3-201ENST00000453230 174 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 RN7SKP164-201ENST00000516138 266 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 MRPS36P4-201ENST00000534436 298 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 PART1_2.1-201ENST00000612397 250 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 AC006504.8-201ENST00000621046 635 ntBASIC-1.05□□□□□ -2.58
HMGA1P17096 AC006366.1-201ENST00000422002 759 ntBASIC-1.06□□□□□ -2.58
HMGA1P17096 AL139824.2-201ENST00000458731 1095 ntBASIC-1.06□□□□□ -2.58
HMGA1P17096 AHI1-208ENST00000488690 712 ntTSL 5 BASIC-1.06□□□□□ -2.58
HMGA1P17096 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-1.06□□□□□ -2.58
HMGA1P17096 AC079382.1-201ENST00000493346 557 ntBASIC-1.06□□□□□ -2.58
HMGA1P17096 RNU6-1232P-201ENST00000516299 86 ntBASIC-1.06□□□□□ -2.58
HMGA1P17096 RNU6-897P-201ENST00000517135 105 ntBASIC-1.06□□□□□ -2.58
HMGA1P17096 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC-1.06□□□□□ -2.58
HMGA1P17096 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-1.06□□□□□ -2.58
HMGA1P17096 AC133485.4-201ENST00000561835 220 ntBASIC-1.06□□□□□ -2.58
HMGA1P17096 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC-1.06□□□□□ -2.58
HMGA1P17096 RNU6-545P-201ENST00000362681 104 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 RNU6-161P-201ENST00000363051 106 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 MTCO2P31-201ENST00000402702 684 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 AL365338.1-201ENST00000422282 858 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-1.07□□□□□ -2.58
HMGA1P17096 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC-1.07□□□□□ -2.58
HMGA1P17096 AC079354.2-201ENST00000453523 154 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 RPL17P19-201ENST00000489069 552 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 RPL39P36-201ENST00000490784 156 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 MIR4637-201ENST00000582405 84 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 AC012433.1-201ENST00000588916 398 ntBASIC-1.07□□□□□ -2.58
HMGA1P17096 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-1.08□□□□□ -2.58
HMGA1P17096 RNU6-1097P-201ENST00000363586 107 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 Y_RNA.324-201ENST00000365165 102 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 ZNF885P-201ENST00000420174 1098 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 AL354692.1-201ENST00000423044 315 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 AC002542.1-201ENST00000440683 193 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 HSFY5P-201ENST00000453726 309 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 SNRPGP7-201ENST00000469016 106 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 AP000870.1-201ENST00000472927 406 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 RPL39P34-201ENST00000477141 156 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 AC022447.4-201ENST00000504053 364 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 MTND3P5-201ENST00000512798 333 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC-1.08□□□□□ -2.58
HMGA1P17096 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-1.08□□□□□ -2.58
HMGA1P17096 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC-1.08□□□□□ -2.58
HMGA1P17096 AC131159.1-201ENST00000621854 213 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 SNORD98-201ENST00000636377 67 ntBASIC-1.08□□□□□ -2.58
HMGA1P17096 RNU6-252P-201ENST00000363232 107 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 RNU6-839P-201ENST00000363347 108 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 RNU6-343P-201ENST00000364709 104 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 Y_RNA.287-201ENST00000364853 94 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 SNORA75B-201ENST00000384053 137 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 U8.16-201ENST00000391279 133 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 MRPL42P3-201ENST00000401492 326 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 RPS3AP3-201ENST00000411933 242 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 AL590135.1-201ENST00000422215 156 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 AC019205.3-201ENST00000424573 156 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 DEFB130D-201ENST00000426866 237 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 AC133104.1-201ENST00000429100 218 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 AC016700.2-201ENST00000446011 156 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-1.09□□□□□ -2.58
HMGA1P17096 AC015911.1-201ENST00000495111 156 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-1.09□□□□□ -2.58
HMGA1P17096 RNU7-41P-201ENST00000515917 61 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 RPL17P51-201ENST00000605218 238 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 AC018462.2-201ENST00000605375 395 ntBASIC-1.09□□□□□ -2.58
HMGA1P17096 RNY4P24-201ENST00000362735 96 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 RNU6-78P-201ENST00000362897 107 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 MIR544A-201ENST00000384855 91 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 AL359634.1-202ENST00000404721 284 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 RNU2-3P-201ENST00000410144 191 ntBASIC-1.1□□□□□ -2.59
HMGA1P17096 HIGD1AP15-201ENST00000416198 280 ntBASIC-1.1□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms