Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 Y_RNA.706-201ENST00000516933 99 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 AC025647.1-201ENST00000517879 253 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 AF235103.2-201ENST00000525753 346 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 AC012493.3-201ENST00000604494 112 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 MIR6873-201ENST00000622788 63 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
HMGB1P09429 Y_RNA.67-201ENST00000362870 100 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 RNU5F-3P-201ENST00000363767 117 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 Y_RNA.179-201ENST00000363844 90 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 RNU6-595P-201ENST00000363944 107 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 Y_RNA.287-201ENST00000364853 94 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 RNU6-1240P-201ENST00000365155 104 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 Y_RNA.473-201ENST00000384333 102 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 COX6CP10-201ENST00000416832 224 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 AL445685.2-201ENST00000422551 342 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.49□□□□□ -2.01
HMGB1P09429 RNU6-221P-201ENST00000459541 99 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 AC091179.3-201ENST00000474761 144 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 MTND5P5-201ENST00000503764 376 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 MIR1273D-201ENST00000577266 86 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 MIR4742-201ENST00000581069 85 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 AL590808.1-201ENST00000618696 141 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 AL133216.2-202ENST00000634512 349 ntBASIC2.49□□□□□ -2.01
HMGB1P09429 MIR515-2-201ENST00000384883 83 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 MIR515-1-201ENST00000384884 83 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 RN7SKP192-201ENST00000411291 327 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 AC016909.1-201ENST00000415916 166 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.48□□□□□ -2.01
HMGB1P09429 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.48□□□□□ -2.01
HMGB1P09429 MTND1P4-201ENST00000435196 415 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 snoU13.27-201ENST00000459278 104 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 AC025033.1-201ENST00000463883 194 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 AC069439.1-201ENST00000494739 167 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 CBX3P8-201ENST00000532412 525 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 AL355802.3-201ENST00000607571 545 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.48□□□□□ -2.01
HMGB1P09429 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.48□□□□□ -2.01
HMGB1P09429 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.48□□□□□ -2.01
HMGB1P09429 AC068137.4-201ENST00000638485 296 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
HMGB1P09429 ICE2P2-201ENST00000483823 2787 ntBASIC2.48□□□□□ -2.01
HMGB1P09429 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
HMGB1P09429 Y_RNA.2-201ENST00000362330 96 ntBASIC2.47□□□□□ -2.01
HMGB1P09429 MIR548F5-201ENST00000408421 86 ntBASIC2.47□□□□□ -2.01
HMGB1P09429 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.47□□□□□ -2.01
HMGB1P09429 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.47□□□□□ -2.01
HMGB1P09429 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.47□□□□□ -2.01
HMGB1P09429 SNORD5.1-201ENST00000458800 75 ntBASIC2.47□□□□□ -2.01
HMGB1P09429 UBE2DNL-203ENST00000474922 222 ntBASIC2.47□□□□□ -2.01
HMGB1P09429 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.47□□□□□ -2.01
HMGB1P09429 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.47□□□□□ -2.01
HMGB1P09429 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.47□□□□□ -2.01
HMGB1P09429 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.47□□□□□ -2.01
HMGB1P09429 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
HMGB1P09429 RNA5SP425-201ENST00000410336 112 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 MTND3P23-201ENST00000431980 347 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 RNU6-107P-201ENST00000516643 102 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.46□□□□□ -2.02
HMGB1P09429 AC104581.2-201ENST00000572227 430 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 SNORA77B-201ENST00000578179 125 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 AP001485.1-201ENST00000604799 199 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 AC100812.1-201ENST00000607622 580 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 AC084782.3-201ENST00000612282 578 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 AC095038.3-201ENST00000634439 195 ntBASIC2.46□□□□□ -2.02
HMGB1P09429 U3.8-201ENST00000363675 217 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 RNU6-271P-201ENST00000363858 105 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 SNORA4.2-201ENST00000365313 147 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 Y_RNA.490-201ENST00000384413 102 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 Y_RNA.500-201ENST00000384466 111 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 MIR10B-201ENST00000385011 110 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 RPS3AP52-201ENST00000435639 297 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 AL021397.1-201ENST00000451806 248 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 TRBV12-1-201ENST00000479785 344 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.45□□□□□ -2.02
HMGB1P09429 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.45□□□□□ -2.02
HMGB1P09429 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.45□□□□□ -2.02
HMGB1P09429 MIR4435-1-201ENST00000582552 80 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 AC011712.1-201ENST00000588959 234 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.45□□□□□ -2.02
HMGB1P09429 AC011494.1-201ENST00000596454 237 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 MZT1P2-201ENST00000604387 248 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 AC010999.1-201ENST00000611856 324 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 AC064859.1-201ENST00000624741 174 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 MIR219B-201ENST00000637023 88 ntBASIC2.45□□□□□ -2.02
HMGB1P09429 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
HMGB1P09429 RNU6-222P-201ENST00000362438 107 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 RNU6-1266P-201ENST00000362794 105 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 RNU6-192P-201ENST00000391253 100 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 MTND3P8-201ENST00000412909 339 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.44□□□□□ -2.02
HMGB1P09429 USP9YP16-201ENST00000430287 407 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 USP9YP23-201ENST00000455085 407 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 RNU7-34P-201ENST00000459394 64 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.44□□□□□ -2.02
HMGB1P09429 HMGN1P12-201ENST00000499125 195 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 AC018710.1-201ENST00000506509 158 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.44□□□□□ -2.02
HMGB1P09429 RNU6-970P-201ENST00000516312 107 ntBASIC2.44□□□□□ -2.02
HMGB1P09429 RNU1-142P-201ENST00000516682 145 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms