Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL078596.1-201ENST00000624856 447 ntBASIC1.74□□□□□ -2.13
VIMP08670 AC008873.1-201ENST00000625051 138 ntBASIC1.74□□□□□ -2.13
VIMP08670 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.74□□□□□ -2.13
VIMP08670 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.74□□□□□ -2.13
VIMP08670 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
VIMP08670 ZNF299P-201ENST00000406845 1804 ntBASIC1.73□□□□□ -2.13
VIMP08670 Y_RNA.48-201ENST00000362710 103 ntBASIC1.73□□□□□ -2.13
VIMP08670 Y_RNA.473-201ENST00000384333 102 ntBASIC1.73□□□□□ -2.13
VIMP08670 MIR934-201ENST00000401241 83 ntBASIC1.73□□□□□ -2.13
VIMP08670 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.73□□□□□ -2.13
VIMP08670 MTCO3P29-201ENST00000432119 779 ntBASIC1.73□□□□□ -2.13
VIMP08670 AC245047.4-201ENST00000433189 144 ntBASIC1.73□□□□□ -2.13
VIMP08670 AC074290.1-201ENST00000448883 135 ntBASIC1.73□□□□□ -2.13
VIMP08670 RPL23AP63-201ENST00000498752 471 ntBASIC1.73□□□□□ -2.13
VIMP08670 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.73□□□□□ -2.13
VIMP08670 RNU7-175P-201ENST00000515915 61 ntBASIC1.73□□□□□ -2.13
VIMP08670 RNA5SP182-201ENST00000516064 82 ntBASIC1.73□□□□□ -2.13
VIMP08670 AL590705.4-201ENST00000532209 134 ntBASIC1.73□□□□□ -2.13
VIMP08670 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.73□□□□□ -2.13
VIMP08670 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.73□□□□□ -2.13
VIMP08670 AC104581.2-201ENST00000572227 430 ntBASIC1.73□□□□□ -2.13
VIMP08670 AC011712.1-201ENST00000588959 234 ntBASIC1.73□□□□□ -2.13
VIMP08670 SNORD11B-201ENST00000607707 90 ntBASIC1.73□□□□□ -2.13
VIMP08670 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.73□□□□□ -2.13
VIMP08670 AC068205.3-201ENST00000636385 468 ntBASIC1.73□□□□□ -2.13
VIMP08670 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.73□□□□□ -2.13
VIMP08670 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.73□□□□□ -2.13
VIMP08670 MTND4P12-201ENST00000498999 1377 ntBASIC1.72□□□□□ -2.13
VIMP08670 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
VIMP08670 RNU6-595P-201ENST00000363944 107 ntBASIC1.72□□□□□ -2.13
VIMP08670 Y_RNA.405-201ENST00000383979 100 ntBASIC1.72□□□□□ -2.13
VIMP08670 Y_RNA.451-201ENST00000384200 100 ntBASIC1.72□□□□□ -2.13
VIMP08670 Y_RNA.505-201ENST00000384489 102 ntBASIC1.72□□□□□ -2.13
VIMP08670 Y_RNA.524-201ENST00000384564 100 ntBASIC1.72□□□□□ -2.13
VIMP08670 Y_RNA.561-201ENST00000384694 100 ntBASIC1.72□□□□□ -2.13
VIMP08670 MIR548K-201ENST00000408406 116 ntBASIC1.72□□□□□ -2.13
VIMP08670 MIR548F5-201ENST00000408421 86 ntBASIC1.72□□□□□ -2.13
VIMP08670 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.72□□□□□ -2.13
VIMP08670 Y_RNA.599-201ENST00000410489 109 ntBASIC1.72□□□□□ -2.13
VIMP08670 RN7SKP223-201ENST00000410582 62 ntBASIC1.72□□□□□ -2.13
VIMP08670 RNU6-57P-201ENST00000411348 103 ntBASIC1.72□□□□□ -2.13
VIMP08670 HMGN2P23-201ENST00000456759 269 ntBASIC1.72□□□□□ -2.13
VIMP08670 RN7SKP210-201ENST00000459176 261 ntBASIC1.72□□□□□ -2.13
VIMP08670 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.72□□□□□ -2.13
VIMP08670 CBX3P8-201ENST00000532412 525 ntBASIC1.72□□□□□ -2.13
VIMP08670 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.72□□□□□ -2.13
VIMP08670 AC011494.1-201ENST00000596454 237 ntBASIC1.72□□□□□ -2.13
VIMP08670 AC018462.2-201ENST00000605375 395 ntBASIC1.72□□□□□ -2.13
VIMP08670 AL353149.1-201ENST00000610667 244 ntBASIC1.72□□□□□ -2.13
VIMP08670 U6atac.1-201ENST00000616025 117 ntBASIC1.72□□□□□ -2.13
VIMP08670 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.72□□□□□ -2.13
VIMP08670 AC006001.4-201ENST00000622243 395 ntBASIC1.72□□□□□ -2.13
VIMP08670 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.72□□□□□ -2.13
VIMP08670 MIR338-201ENST00000636369 67 ntBASIC1.72□□□□□ -2.13
VIMP08670 RNU6-661P-201ENST00000362409 107 ntBASIC1.71□□□□□ -2.14
VIMP08670 Y_RNA.72-201ENST00000362894 103 ntBASIC1.71□□□□□ -2.14
VIMP08670 RNU6-137P-201ENST00000363680 108 ntBASIC1.71□□□□□ -2.14
VIMP08670 RNU6-159P-201ENST00000391080 106 ntBASIC1.71□□□□□ -2.14
VIMP08670 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.71□□□□□ -2.14
VIMP08670 Z98742.3-201ENST00000418637 326 ntBASIC1.71□□□□□ -2.14
VIMP08670 RPS3AP52-201ENST00000435639 297 ntBASIC1.71□□□□□ -2.14
VIMP08670 AP000870.1-201ENST00000472927 406 ntBASIC1.71□□□□□ -2.14
VIMP08670 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.71□□□□□ -2.14
VIMP08670 AC026782.1-201ENST00000512952 449 ntBASIC1.71□□□□□ -2.14
VIMP08670 AC134698.4-201ENST00000523451 826 ntBASIC1.71□□□□□ -2.14
VIMP08670 AC084364.2-201ENST00000546924 395 ntBASIC1.71□□□□□ -2.14
VIMP08670 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.71□□□□□ -2.14
VIMP08670 AC092794.1-201ENST00000612734 582 ntBASIC1.71□□□□□ -2.14
VIMP08670 AC010615.1-201ENST00000594254 1764 ntBASIC1.71□□□□□ -2.14
VIMP08670 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
VIMP08670 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.7□□□□□ -2.14
VIMP08670 RNU1-62P-201ENST00000362599 164 ntBASIC1.7□□□□□ -2.14
VIMP08670 RNU6-727P-201ENST00000363592 107 ntBASIC1.7□□□□□ -2.14
VIMP08670 RNU6-1019P-201ENST00000364424 107 ntBASIC1.7□□□□□ -2.14
VIMP08670 SNORD87-201ENST00000364849 89 ntBASIC1.7□□□□□ -2.14
VIMP08670 MIR520A-201ENST00000384862 85 ntBASIC1.7□□□□□ -2.14
VIMP08670 AC074085.1-201ENST00000413598 418 ntBASIC1.7□□□□□ -2.14
VIMP08670 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.7□□□□□ -2.14
VIMP08670 CST2P1-201ENST00000425770 87 ntBASIC1.7□□□□□ -2.14
VIMP08670 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.7□□□□□ -2.14
VIMP08670 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.7□□□□□ -2.14
VIMP08670 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.7□□□□□ -2.14
VIMP08670 RNU6-1016P-201ENST00000516689 94 ntBASIC1.7□□□□□ -2.14
VIMP08670 RNA5SP437-201ENST00000517249 129 ntBASIC1.7□□□□□ -2.14
VIMP08670 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.7□□□□□ -2.14
VIMP08670 AC005858.4-201ENST00000623191 700 ntBASIC1.7□□□□□ -2.14
VIMP08670 snoZ196.1-201ENST00000625269 89 ntBASIC1.7□□□□□ -2.14
VIMP08670 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.7□□□□□ -2.14
VIMP08670 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.7□□□□□ -2.14
VIMP08670 AP000648.3-201ENST00000623539 4507 ntBASIC1.7□□□□□ -2.14
VIMP08670 MIR424-201ENST00000362227 98 ntBASIC1.69□□□□□ -2.14
VIMP08670 snoU2-30.2-201ENST00000362805 70 ntBASIC1.69□□□□□ -2.14
VIMP08670 Y_RNA.490-201ENST00000384413 102 ntBASIC1.69□□□□□ -2.14
VIMP08670 MIR30A-201ENST00000385092 71 ntBASIC1.69□□□□□ -2.14
VIMP08670 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
VIMP08670 Y_RNA.594-201ENST00000410373 140 ntBASIC1.69□□□□□ -2.14
VIMP08670 RNU2-7P-201ENST00000410794 178 ntBASIC1.69□□□□□ -2.14
VIMP08670 AC007098.1-201ENST00000420122 367 ntBASIC1.69□□□□□ -2.14
VIMP08670 HMGN2P34-201ENST00000437647 269 ntBASIC1.69□□□□□ -2.14
VIMP08670 AC003989.2-201ENST00000440224 169 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms