Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.59□□□□□ -2.15
SDC3O75056 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC3O75056 MIR4255-201ENST00000579351 72 ntBASIC1.59□□□□□ -2.15
SDC3O75056 AC010928.2-201ENST00000588017 287 ntBASIC1.59□□□□□ -2.15
SDC3O75056 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.59□□□□□ -2.15
SDC3O75056 AP003465.2-201ENST00000602571 373 ntBASIC1.59□□□□□ -2.15
SDC3O75056 AC080078.2-201ENST00000603766 501 ntBASIC1.59□□□□□ -2.15
SDC3O75056 AP000907.4-201ENST00000604143 237 ntBASIC1.59□□□□□ -2.15
SDC3O75056 SNRPGP20-201ENST00000604477 205 ntBASIC1.59□□□□□ -2.15
SDC3O75056 AC007014.2-201ENST00000615581 479 ntBASIC1.59□□□□□ -2.15
SDC3O75056 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.59□□□□□ -2.15
SDC3O75056 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.59□□□□□ -2.16
SDC3O75056 MTND4P5-201ENST00000435821 1374 ntBASIC1.59□□□□□ -2.16
SDC3O75056 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
SDC3O75056 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
SDC3O75056 RNU6-545P-201ENST00000362681 104 ntBASIC1.58□□□□□ -2.16
SDC3O75056 Y_RNA.132-201ENST00000363421 102 ntBASIC1.58□□□□□ -2.16
SDC3O75056 RNU4-42P-201ENST00000364738 142 ntBASIC1.58□□□□□ -2.16
SDC3O75056 Y_RNA.301-201ENST00000364990 103 ntBASIC1.58□□□□□ -2.16
SDC3O75056 MIR30A-201ENST00000385092 71 ntBASIC1.58□□□□□ -2.16
SDC3O75056 MIR1283-1-201ENST00000408494 87 ntBASIC1.58□□□□□ -2.16
SDC3O75056 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
SDC3O75056 MTND4LP16-201ENST00000440828 295 ntBASIC1.58□□□□□ -2.16
SDC3O75056 FGF7P6-202ENST00000451282 293 ntBASIC1.58□□□□□ -2.16
SDC3O75056 AC097473.1-201ENST00000508142 408 ntBASIC1.58□□□□□ -2.16
SDC3O75056 RNU6-566P-201ENST00000516790 107 ntBASIC1.58□□□□□ -2.16
SDC3O75056 RNA5SP54-201ENST00000516951 92 ntBASIC1.58□□□□□ -2.16
SDC3O75056 RNA5SP454-201ENST00000517231 127 ntBASIC1.58□□□□□ -2.16
SDC3O75056 MIR3198-2-201ENST00000577868 80 ntBASIC1.58□□□□□ -2.16
SDC3O75056 MIR5696-201ENST00000578474 85 ntBASIC1.58□□□□□ -2.16
SDC3O75056 MIR5094-201ENST00000578766 85 ntBASIC1.58□□□□□ -2.16
SDC3O75056 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.58□□□□□ -2.16
SDC3O75056 MIR5006-201ENST00000583027 110 ntBASIC1.58□□□□□ -2.16
SDC3O75056 AC018638.8-201ENST00000588755 281 ntBASIC1.58□□□□□ -2.16
SDC3O75056 BX248123.2-201ENST00000606318 124 ntBASIC1.58□□□□□ -2.16
SDC3O75056 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.58□□□□□ -2.16
SDC3O75056 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.58□□□□□ -2.16
SDC3O75056 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SDC3O75056 MIR126-201ENST00000362291 85 ntBASIC1.57□□□□□ -2.16
SDC3O75056 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.57□□□□□ -2.16
SDC3O75056 MIR1323-201ENST00000408090 73 ntBASIC1.57□□□□□ -2.16
SDC3O75056 MIR320B2-201ENST00000408479 138 ntBASIC1.57□□□□□ -2.16
SDC3O75056 RN7SKP101-201ENST00000411376 320 ntBASIC1.57□□□□□ -2.16
SDC3O75056 AC004866.1-201ENST00000411748 78 ntBASIC1.57□□□□□ -2.16
SDC3O75056 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.57□□□□□ -2.16
SDC3O75056 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.57□□□□□ -2.16
SDC3O75056 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.57□□□□□ -2.16
SDC3O75056 MTCO3P8-201ENST00000453691 755 ntBASIC1.57□□□□□ -2.16
SDC3O75056 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.57□□□□□ -2.16
SDC3O75056 SNORA31.17-201ENST00000516953 127 ntBASIC1.57□□□□□ -2.16
SDC3O75056 RNU6-856P-201ENST00000516959 98 ntBASIC1.57□□□□□ -2.16
SDC3O75056 AF235103.2-201ENST00000525753 346 ntBASIC1.57□□□□□ -2.16
SDC3O75056 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.57□□□□□ -2.16
SDC3O75056 MIR4285-201ENST00000581001 85 ntBASIC1.57□□□□□ -2.16
SDC3O75056 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.57□□□□□ -2.16
SDC3O75056 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
SDC3O75056 MIR424-201ENST00000362227 98 ntBASIC1.56□□□□□ -2.16
SDC3O75056 RNU6-137P-201ENST00000363680 108 ntBASIC1.56□□□□□ -2.16
SDC3O75056 RNU6-60P-201ENST00000364792 103 ntBASIC1.56□□□□□ -2.16
SDC3O75056 RNU6-439P-201ENST00000384188 106 ntBASIC1.56□□□□□ -2.16
SDC3O75056 SNORA67.6-201ENST00000391093 99 ntBASIC1.56□□□□□ -2.16
SDC3O75056 RNU6-174P-201ENST00000410406 106 ntBASIC1.56□□□□□ -2.16
SDC3O75056 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.56□□□□□ -2.16
SDC3O75056 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.56□□□□□ -2.16
SDC3O75056 AC010409.1-201ENST00000487382 476 ntBASIC1.56□□□□□ -2.16
SDC3O75056 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.56□□□□□ -2.16
SDC3O75056 RNU6-344P-201ENST00000516635 111 ntBASIC1.56□□□□□ -2.16
SDC3O75056 RNU6-1198P-201ENST00000516904 67 ntBASIC1.56□□□□□ -2.16
SDC3O75056 SUMO2P18-201ENST00000518873 252 ntBASIC1.56□□□□□ -2.16
SDC3O75056 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.56□□□□□ -2.16
SDC3O75056 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.56□□□□□ -2.16
SDC3O75056 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.56□□□□□ -2.16
SDC3O75056 MIR4753-201ENST00000585119 83 ntBASIC1.56□□□□□ -2.16
SDC3O75056 AC016925.2-201ENST00000605108 242 ntBASIC1.56□□□□□ -2.16
SDC3O75056 AC093913.1-201ENST00000614178 329 ntBASIC1.56□□□□□ -2.16
SDC3O75056 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.56□□□□□ -2.16
SDC3O75056 AC098679.4-201ENST00000624241 654 ntBASIC1.56□□□□□ -2.16
SDC3O75056 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.56□□□□□ -2.16
SDC3O75056 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SDC3O75056 AL159152.1-201ENST00000635019 2587 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
SDC3O75056 RNU6-245P-201ENST00000384020 107 ntBASIC1.55□□□□□ -2.16
SDC3O75056 SNORA67.2-201ENST00000384300 149 ntBASIC1.55□□□□□ -2.16
SDC3O75056 RNU6-997P-201ENST00000384725 107 ntBASIC1.55□□□□□ -2.16
SDC3O75056 MIR586-201ENST00000385035 97 ntBASIC1.55□□□□□ -2.16
SDC3O75056 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
SDC3O75056 RNU6-510P-201ENST00000391239 108 ntBASIC1.55□□□□□ -2.16
SDC3O75056 MIR934-201ENST00000401241 83 ntBASIC1.55□□□□□ -2.16
SDC3O75056 RPL21P111-201ENST00000418453 477 ntBASIC1.55□□□□□ -2.16
SDC3O75056 Z82188.1-201ENST00000436709 154 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AC092473.1-201ENST00000441098 221 ntBASIC1.55□□□□□ -2.16
SDC3O75056 NFU1P2-201ENST00000448700 469 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AC009474.2-201ENST00000451383 136 ntBASIC1.55□□□□□ -2.16
SDC3O75056 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AC112492.4-201ENST00000456549 352 ntBASIC1.55□□□□□ -2.16
SDC3O75056 snoU13.30-201ENST00000458951 104 ntBASIC1.55□□□□□ -2.16
SDC3O75056 RNU6-329P-201ENST00000459618 107 ntBASIC1.55□□□□□ -2.16
SDC3O75056 RNU4-49P-201ENST00000516080 140 ntBASIC1.55□□□□□ -2.16
SDC3O75056 RNU1-92P-201ENST00000517017 135 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 201.4 ms