Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MIR219B-201ENST00000637023 88 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
HOXC11O43248 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
HOXC11O43248 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HOXC11O43248 Y_RNA.179-201ENST00000363844 90 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 Y_RNA.259-201ENST00000364619 101 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 Y_RNA.356-201ENST00000365475 113 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXC11O43248 RNY3P14-201ENST00000384309 102 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AL356379.1-201ENST00000414105 126 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 MTND4LP11-201ENST00000422184 280 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AC096920.1-201ENST00000423991 241 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AC092423.1-201ENST00000430165 186 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 RPL30P15-201ENST00000457129 321 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AC067942.3-201ENST00000512025 362 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 SUMO2P18-201ENST00000518873 252 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 APOOP3-201ENST00000536787 586 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 FRG2DP-202ENST00000566967 323 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AC004584.2-201ENST00000570407 410 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 MIR3169-201ENST00000578032 83 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AC005786.1-201ENST00000588553 154 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AL132765.2-201ENST00000610812 351 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AC005296.1-201ENST00000616145 209 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AL162373.1-201ENST00000620433 407 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 AC091932.3-201ENST00000624223 323 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 MTND5P16-201ENST00000460269 1703 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.24□□□□□ -2.05
HOXC11O43248 AL159152.1-201ENST00000635019 2587 ntBASIC2.24□□□□□ -2.05
HOXC11O43248 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXC11O43248 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
HOXC11O43248 RNA5SP432-201ENST00000362480 116 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 Y_RNA.364-201ENST00000365532 101 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 RNU6-793P-201ENST00000384233 104 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 RNU6-310P-201ENST00000384655 107 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 MIR10B-201ENST00000385011 110 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 MTCYBP4-201ENST00000401524 249 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 Y_RNA.646-201ENST00000410980 101 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 RNU6-1304P-201ENST00000411374 106 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXC11O43248 UBE2V1P7-201ENST00000446395 340 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 HMGN2P9-201ENST00000476875 229 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.23□□□□□ -2.05
HOXC11O43248 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXC11O43248 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXC11O43248 AC090617.3-201ENST00000573670 475 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 AC005034.5-201ENST00000604219 466 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 AC083806.3-201ENST00000614016 455 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.23□□□□□ -2.05
HOXC11O43248 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXC11O43248 AC009487.4-201ENST00000624969 3585 ntBASIC2.23□□□□□ -2.05
HOXC11O43248 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
HOXC11O43248 RNU6-727P-201ENST00000363592 107 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 RNU6-975P-201ENST00000384296 105 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 SNORA48.3-201ENST00000391081 134 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 SNORA75.6-201ENST00000391318 127 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXC11O43248 AL158823.1-201ENST00000418441 478 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 HMGN2P38-201ENST00000423806 265 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 RNU7-57P-201ENST00000459540 60 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXC11O43248 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXC11O43248 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXC11O43248 AL627230.6-201ENST00000611129 280 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 AC010999.1-201ENST00000611856 324 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 AC068205.3-201ENST00000636385 468 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 AP000553.5-201ENST00000641933 54 ntBASIC2.22□□□□□ -2.05
HOXC11O43248 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
HOXC11O43248 MIR340-201ENST00000362125 95 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 RNU6-222P-201ENST00000362438 107 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 Y_RNA.263-201ENST00000364659 114 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 SNORA67.3-201ENST00000384366 140 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 RNU6-1235P-201ENST00000384559 107 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 RNU1-139P-201ENST00000391307 165 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 MIR1289-2-201ENST00000408360 111 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 RNA5SP501-201ENST00000410990 112 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
HOXC11O43248 MTCO2P27-201ENST00000420740 428 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC11O43248 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC11O43248 AL353689.1-201ENST00000438895 199 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXC11O43248 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.21□□□□□ -2.06
HOXC11O43248 RNA5SP57-201ENST00000459463 123 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 RNU6-498P-201ENST00000459468 107 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC11O43248 RNU6-507P-201ENST00000516045 100 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 RNU6-277P-201ENST00000516272 106 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC11O43248 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC11O43248 AC008873.1-201ENST00000625051 138 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 AL359851.1-201ENST00000569460 4997 ntBASIC2.21□□□□□ -2.06
HOXC11O43248 Y_RNA.70-201ENST00000362886 110 ntBASIC2.2□□□□□ -2.06
HOXC11O43248 RNU6-99P-201ENST00000364721 107 ntBASIC2.2□□□□□ -2.06
HOXC11O43248 RNA5SP212-201ENST00000391223 107 ntBASIC2.2□□□□□ -2.06
HOXC11O43248 AL023284.1-201ENST00000403956 276 ntBASIC2.2□□□□□ -2.06
HOXC11O43248 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HOXC11O43248 RPL23AP6-201ENST00000446637 472 ntBASIC2.2□□□□□ -2.06
HOXC11O43248 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms