Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNA5SP504-201ENST00000410676 117 ntBASIC3.05□□□□□ -1.92
CBX4O00257 RNU2-32P-201ENST00000411193 191 ntBASIC3.05□□□□□ -1.92
CBX4O00257 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.05□□□□□ -1.92
CBX4O00257 TOMM22P2-201ENST00000430735 237 ntBASIC3.05□□□□□ -1.92
CBX4O00257 EEF1B2P7-201ENST00000451177 676 ntBASIC3.05□□□□□ -1.92
CBX4O00257 NDUFB4P10-201ENST00000452541 359 ntBASIC3.05□□□□□ -1.92
CBX4O00257 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.05□□□□□ -1.92
CBX4O00257 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.05□□□□□ -1.92
CBX4O00257 AC114982.1-201ENST00000469402 321 ntBASIC3.05□□□□□ -1.92
CBX4O00257 AC091826.1-201ENST00000514065 313 ntBASIC3.05□□□□□ -1.92
CBX4O00257 MIR3117-201ENST00000584034 78 ntBASIC3.05□□□□□ -1.92
CBX4O00257 AC012433.1-201ENST00000588916 398 ntBASIC3.05□□□□□ -1.92
CBX4O00257 AC006380.1-201ENST00000603598 186 ntBASIC3.05□□□□□ -1.92
CBX4O00257 AC091932.3-201ENST00000624223 323 ntBASIC3.05□□□□□ -1.92
CBX4O00257 AC127459.3-201ENST00000624328 466 ntBASIC3.05□□□□□ -1.92
CBX4O00257 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.05□□□□□ -1.92
CBX4O00257 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.04□□□□□ -1.92
CBX4O00257 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CBX4O00257 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
CBX4O00257 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CBX4O00257 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.04□□□□□ -1.92
CBX4O00257 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CBX4O00257 Y_RNA.16-201ENST00000362421 102 ntBASIC3.04□□□□□ -1.92
CBX4O00257 RNU6-379P-201ENST00000363813 104 ntBASIC3.04□□□□□ -1.92
CBX4O00257 SNORA20.1-201ENST00000364790 130 ntBASIC3.04□□□□□ -1.92
CBX4O00257 Y_RNA.286-201ENST00000364813 102 ntBASIC3.04□□□□□ -1.92
CBX4O00257 SNORA67.2-201ENST00000384300 149 ntBASIC3.04□□□□□ -1.92
CBX4O00257 Y_RNA.477-201ENST00000384352 108 ntBASIC3.04□□□□□ -1.92
CBX4O00257 Y_RNA.569-201ENST00000384749 103 ntBASIC3.04□□□□□ -1.92
CBX4O00257 EEF1A1P41-201ENST00000414667 207 ntBASIC3.04□□□□□ -1.92
CBX4O00257 AC108059.2-201ENST00000434626 151 ntBASIC3.04□□□□□ -1.92
CBX4O00257 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.04□□□□□ -1.92
CBX4O00257 POLR2KP2-201ENST00000438155 177 ntBASIC3.04□□□□□ -1.92
CBX4O00257 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.04□□□□□ -1.92
CBX4O00257 MTND4LP30-201ENST00000454092 297 ntBASIC3.04□□□□□ -1.92
CBX4O00257 SRIP1-201ENST00000489235 288 ntBASIC3.04□□□□□ -1.92
CBX4O00257 HMGB3P17-201ENST00000504195 649 ntBASIC3.04□□□□□ -1.92
CBX4O00257 RNA5SP356-201ENST00000515972 94 ntBASIC3.04□□□□□ -1.92
CBX4O00257 SCARNA24.2-201ENST00000516968 130 ntBASIC3.04□□□□□ -1.92
CBX4O00257 SNORA48.11-201ENST00000517015 89 ntBASIC3.04□□□□□ -1.92
CBX4O00257 GTF3AP2-201ENST00000557014 266 ntBASIC3.04□□□□□ -1.92
CBX4O00257 AC055872.1-201ENST00000570978 278 ntBASIC3.04□□□□□ -1.92
CBX4O00257 MIR3128-201ENST00000581957 66 ntBASIC3.04□□□□□ -1.92
CBX4O00257 MIR4753-201ENST00000585119 83 ntBASIC3.04□□□□□ -1.92
CBX4O00257 AL109918.3-201ENST00000603072 338 ntBASIC3.04□□□□□ -1.92
CBX4O00257 AL355297.2-201ENST00000604792 129 ntBASIC3.04□□□□□ -1.92
CBX4O00257 IGHVIII-44-202ENST00000636235 289 ntBASIC3.04□□□□□ -1.92
CBX4O00257 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
CBX4O00257 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.04□□□□□ -1.92
CBX4O00257 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.03□□□□□ -1.92
CBX4O00257 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
CBX4O00257 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.03□□□□□ -1.92
CBX4O00257 Y_RNA.352-201ENST00000365439 102 ntBASIC3.03□□□□□ -1.92
CBX4O00257 DYNLT3P1-201ENST00000378574 347 ntBASIC3.03□□□□□ -1.92
CBX4O00257 RNU6-514P-201ENST00000384208 107 ntBASIC3.03□□□□□ -1.92
CBX4O00257 SNORA46-201ENST00000384762 135 ntBASIC3.03□□□□□ -1.92
CBX4O00257 MIR627-201ENST00000384979 97 ntBASIC3.03□□□□□ -1.92
CBX4O00257 MIR95-201ENST00000385072 81 ntBASIC3.03□□□□□ -1.92
CBX4O00257 MIR1283-1-201ENST00000408494 87 ntBASIC3.03□□□□□ -1.92
CBX4O00257 AC104332.2-201ENST00000429959 156 ntBASIC3.03□□□□□ -1.92
CBX4O00257 SERF1AP1-201ENST00000514575 187 ntBASIC3.03□□□□□ -1.92
CBX4O00257 RNU6-1023P-201ENST00000516137 106 ntBASIC3.03□□□□□ -1.92
CBX4O00257 RNU6-965P-201ENST00000516721 96 ntBASIC3.03□□□□□ -1.92
CBX4O00257 RNU2-31P-201ENST00000516954 155 ntBASIC3.03□□□□□ -1.92
CBX4O00257 AC109329.2-201ENST00000519658 482 ntBASIC3.03□□□□□ -1.92
CBX4O00257 AC022616.8-201ENST00000533569 253 ntBASIC3.03□□□□□ -1.92
CBX4O00257 AC008749.1-201ENST00000597650 306 ntBASIC3.03□□□□□ -1.92
CBX4O00257 AL590240.4-201ENST00000616908 390 ntBASIC3.03□□□□□ -1.92
CBX4O00257 AL449363.1-201ENST00000617815 186 ntBASIC3.03□□□□□ -1.92
CBX4O00257 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.03□□□□□ -1.92
CBX4O00257 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
CBX4O00257 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.93
CBX4O00257 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
CBX4O00257 AC092593.1-201ENST00000515413 1815 ntBASIC3.03□□□□□ -1.93
CBX4O00257 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.02□□□□□ -1.93
CBX4O00257 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.02□□□□□ -1.93
CBX4O00257 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.02□□□□□ -1.93
CBX4O00257 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.02□□□□□ -1.93
CBX4O00257 SNORA51.4-201ENST00000364993 124 ntBASIC3.02□□□□□ -1.93
CBX4O00257 RNU6-1318P-201ENST00000365389 103 ntBASIC3.02□□□□□ -1.93
CBX4O00257 RNU6-326P-201ENST00000365480 107 ntBASIC3.02□□□□□ -1.93
CBX4O00257 Y_RNA.446-201ENST00000384178 104 ntBASIC3.02□□□□□ -1.93
CBX4O00257 Y_RNA.552-201ENST00000384665 112 ntBASIC3.02□□□□□ -1.93
CBX4O00257 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CBX4O00257 RNU2-54P-201ENST00000410299 190 ntBASIC3.02□□□□□ -1.93
CBX4O00257 AL139132.1-201ENST00000431587 344 ntBASIC3.02□□□□□ -1.93
CBX4O00257 RN7SL633P-201ENST00000488974 297 ntBASIC3.02□□□□□ -1.93
CBX4O00257 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.02□□□□□ -1.93
CBX4O00257 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.02□□□□□ -1.93
CBX4O00257 SCGB1D5P-201ENST00000515134 247 ntBASIC3.02□□□□□ -1.93
CBX4O00257 RN7SKP132-201ENST00000516001 208 ntBASIC3.02□□□□□ -1.93
CBX4O00257 RNU6-155P-201ENST00000516347 100 ntBASIC3.02□□□□□ -1.93
CBX4O00257 AC245166.1-201ENST00000521012 253 ntBASIC3.02□□□□□ -1.93
CBX4O00257 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.02□□□□□ -1.93
CBX4O00257 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.02□□□□□ -1.93
CBX4O00257 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
CBX4O00257 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CBX4O00257 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CBX4O00257 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.01□□□□□ -1.93
CBX4O00257 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms