Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SDAD1P3-201ENST00000427380 333 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS4AQ9UN37 RPEP5-201ENST00000441137 268 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS4AQ9UN37 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS4AQ9UN37 AC067942.3-201ENST00000512025 362 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS4AQ9UN37 AC018630.3-201ENST00000542637 96 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.62□□□□□ -1.99
VPS4AQ9UN37 MIR3616-201ENST00000584070 92 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 MIR4769-201ENST00000584126 77 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 RPS29P30-201ENST00000600975 111 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 AL049779.4-201ENST00000604500 156 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 AC069294.1-201ENST00000608397 350 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 AC005296.1-201ENST00000616145 209 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 AC008121.3-201ENST00000618726 433 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 U6.92-201ENST00000636464 89 ntBASIC2.62□□□□□ -1.99
VPS4AQ9UN37 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS4AQ9UN37 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS4AQ9UN37 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 RNA5SP393-201ENST00000363423 117 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 RNU6-873P-201ENST00000363833 107 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 RPL21P1-201ENST00000399532 476 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 MRPL35P1-201ENST00000404272 572 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 RNU6-130P-201ENST00000411112 103 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC073901.1-201ENST00000462471 408 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 MTCO2P24-201ENST00000515611 426 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC022868.1-201ENST00000517767 391 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC131281.1-201ENST00000522984 164 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC026470.2-201ENST00000561492 181 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC090616.3-201ENST00000582184 217 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 MIR3199-1-201ENST00000582434 88 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AL390123.1-201ENST00000603216 237 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC064859.1-201ENST00000624741 174 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 AC135776.4-201ENST00000624300 1904 ntBASIC2.61□□□□□ -1.99
VPS4AQ9UN37 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS4AQ9UN37 RNU6-1309P-201ENST00000363305 108 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 RNU5F-3P-201ENST00000363767 117 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 SNORA25.6-201ENST00000364121 118 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 Y_RNA.214-201ENST00000364201 112 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 RNU1-138P-201ENST00000384093 164 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 SNORA51.11-201ENST00000384442 131 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 MTCYBP9-201ENST00000431021 303 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS4AQ9UN37 AC007395.1-201ENST00000451333 677 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 MTATP8P1-201ENST00000467115 207 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 RNA5SP24-201ENST00000516478 95 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 COX6CP5-201ENST00000527162 228 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 DEFB131C-201ENST00000528817 165 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 AC093023.1-201ENST00000547375 507 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 AC090517.1-201ENST00000569307 266 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 RAC1P9-201ENST00000604990 392 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS4AQ9UN37 ZNF204P-201ENST00000416749 2397 ntBASIC2.6□□□□□ -1.99
VPS4AQ9UN37 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS4AQ9UN37 RNU1-62P-201ENST00000362599 164 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 RNA5SP361-201ENST00000362686 118 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 Y_RNA.152-201ENST00000363578 100 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 RNU6-1274P-201ENST00000384557 107 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 MIR592-201ENST00000384959 97 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS4AQ9UN37 RNU6-1001P-201ENST00000411265 100 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS4AQ9UN37 RPL26P26-201ENST00000480251 434 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 MRPS35P2-201ENST00000508242 191 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
VPS4AQ9UN37 MIR5695-201ENST00000579717 85 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 SNRPGP20-201ENST00000604477 205 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 RPL17P51-201ENST00000605218 238 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS4AQ9UN37 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.59□□□□□ -1.99
VPS4AQ9UN37 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
VPS4AQ9UN37 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.59□□□□□ -2
VPS4AQ9UN37 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -2
VPS4AQ9UN37 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
VPS4AQ9UN37 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
VPS4AQ9UN37 ZNF271P-202ENST00000465539 1970 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.58□□□□□ -2
VPS4AQ9UN37 Y_RNA.471-201ENST00000384312 102 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 MIR218-1-201ENST00000384999 110 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 MIR549A-201ENST00000385268 96 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 RNU6-220P-201ENST00000390919 107 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 SNORD78.2-201ENST00000391076 69 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 SNORA12-201ENST00000391162 147 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 AC004866.1-201ENST00000411748 78 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 DPH3P2-201ENST00000422618 250 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 CBX3P6-201ENST00000430257 527 ntBASIC2.58□□□□□ -2
VPS4AQ9UN37 AC140059.1-201ENST00000489238 361 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms