Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU2-70P-201ENST00000410718 179 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 RPL30P4-201ENST00000429309 333 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 AC093663.1-201ENST00000497190 394 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 RAC1P2-201ENST00000511164 579 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 SNORA74D-201ENST00000516404 141 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 AC026403.1-201ENST00000518938 295 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 MIR3121-201ENST00000579680 77 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 AC013412.1-201ENST00000610687 192 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 MIR6129-201ENST00000616087 109 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 uc_338.4-201ENST00000616635 176 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 GABRG2-229ENST00000641017 3628 ntBASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.25□□□□□ -1.73
LIMD1Q9UGP4 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 Y_RNA.203-201ENST00000364106 102 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 SNORA14A-201ENST00000364773 135 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 DYNLT3P1-201ENST00000378574 347 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 AC063976.3-201ENST00000426849 329 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 HLA-N-201ENST00000437516 135 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 HMGN2P7-201ENST00000456186 273 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 AC080013.2-201ENST00000460866 323 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 RN7SL323P-201ENST00000494712 295 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 RNU6-772P-201ENST00000516042 105 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 SNORD77.4-201ENST00000516158 81 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 MIR6868-201ENST00000611215 58 ntBASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.24□□□□□ -1.73
LIMD1Q9UGP4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 AC138915.1-201ENST00000565427 1685 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 MIR448-201ENST00000362131 111 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 RNU6-235P-201ENST00000362644 107 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 SNORA5A-201ENST00000384111 134 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 AC069285.2-201ENST00000440210 275 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 AL158147.1-201ENST00000443970 75 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 RPS29P21-201ENST00000496272 170 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 RNU6-711P-201ENST00000517255 106 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 CYP4A43P-201ENST00000568156 121 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 MTND5P34-201ENST00000568888 325 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 MIR4662B-201ENST00000579498 81 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 AC097639.2-201ENST00000603159 172 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.23□□□□□ -1.73
LIMD1Q9UGP4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 RNA5SP139-201ENST00000364340 117 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 RNU6-418P-201ENST00000384035 107 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 U8.11-201ENST00000384699 133 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 AC009414.1-201ENST00000427200 443 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 MICF-203ENST00000432679 129 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 U8.18-201ENST00000459285 133 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 RNU5E-3P-201ENST00000515913 68 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 RNA5SP360-201ENST00000516555 118 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 CYCSP30-201ENST00000546447 172 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 UCA1.1-201ENST00000620952 75 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 MIR7157-201ENST00000635801 60 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 AC073346.2-201ENST00000624724 2058 ntBASIC4.22□□□□□ -1.73
LIMD1Q9UGP4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
LIMD1Q9UGP4 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 SNORA63.4-201ENST00000362763 126 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 U8.1-201ENST00000362843 134 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 RNU6-755P-201ENST00000364400 103 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 Y_RNA.280-201ENST00000364765 112 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 Y_RNA.525-201ENST00000384570 113 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 MIR513A2-201ENST00000385249 127 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 CYCSP49-201ENST00000420810 319 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 AC010469.1-201ENST00000463864 576 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 MRPS36P2-201ENST00000512569 299 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 RPL23AP91-201ENST00000569211 455 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 AC105245.1-201ENST00000581934 244 ntBASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LIMD1Q9UGP4 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms