Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 ZNF519P3-201ENST00000557158 1032 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 MIR4742-201ENST00000581069 85 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AL359999.1-201ENST00000604513 294 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AP000240.1-201ENST00000609910 452 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AC116165.2-201ENST00000616705 206 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 snoZ196.1-201ENST00000625269 89 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNU5F-6P-201ENST00000362979 116 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 Y_RNA.85-201ENST00000363014 111 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 SNORA24.1-201ENST00000384401 135 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AL117339.3-201ENST00000418733 162 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AC090960.1-201ENST00000421072 306 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AC002350.1-201ENST00000490759 375 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AC105417.1-201ENST00000514691 285 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNU6-197P-201ENST00000516680 100 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNU1-142P-201ENST00000516682 145 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNU6-922P-201ENST00000516753 99 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AP000720.1-201ENST00000625091 483 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 OR5AK4P-201ENST00000635912 903 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNU4-79P-201ENST00000362764 141 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 RNU6-199P-201ENST00000362954 107 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 Y_RNA.363-201ENST00000365529 113 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.29□□□□□ -2.36
SCN3AQ9NY46 EPS15P1-201ENST00000448836 336 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AF186996.7-201ENST00000492781 209 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC0.29□□□□□ -2.36
SCN3AQ9NY46 RNU4-54P-201ENST00000516428 129 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC069113.1-201ENST00000517763 267 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC004584.2-201ENST00000570407 410 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 MTND1P15-201ENST00000579262 949 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC064872.1-201ENST00000604823 1072 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC104465.1-201ENST00000611365 139 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC106754.2-201ENST00000623006 233 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC019226.2-201ENST00000625973 424 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 AC099654.13-201ENST00000639774 207 ntBASIC0.29□□□□□ -2.36
SCN3AQ9NY46 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
SCN3AQ9NY46 RNU6-1317P-201ENST00000364582 104 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 RNU6-336P-201ENST00000364891 107 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 MIR1253-201ENST00000408273 105 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AL606662.1-201ENST00000445763 553 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AC009237.7-201ENST00000447357 229 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AC016550.1-201ENST00000505348 785 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.28□□□□□ -2.36
SCN3AQ9NY46 RNU4-57P-201ENST00000515980 135 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 MTND4P33-201ENST00000556706 766 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AL451064.1-201ENST00000607718 471 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AC104010.1-201ENST00000616889 150 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AC010608.3-201ENST00000625048 527 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 AC068137.4-201ENST00000638485 296 ntBASIC0.28□□□□□ -2.36
SCN3AQ9NY46 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
SCN3AQ9NY46 RNU6-793P-201ENST00000384233 104 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 RNU6-1031P-201ENST00000384773 107 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 MTATP6P16-201ENST00000434543 526 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.28□□□□□ -2.37
SCN3AQ9NY46 AC074290.1-201ENST00000448883 135 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 AC245047.8-201ENST00000456455 284 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 U8.21-201ENST00000459536 136 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 RNU6-947P-201ENST00000516264 106 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 FGF7P1-201ENST00000582820 288 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 AC100812.1-201ENST00000607622 580 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 AC009159.2-201ENST00000617603 606 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 7SK.10-201ENST00000621414 298 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 AL603839.4-201ENST00000624658 1005 ntBASIC0.28□□□□□ -2.37
SCN3AQ9NY46 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.28□□□□□ -2.37
SCN3AQ9NY46 MTND5P17-201ENST00000418405 1603 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 RNU1-76P-201ENST00000362903 159 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 RNU6-179P-201ENST00000363350 107 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 RNU6-1286P-201ENST00000383871 107 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 RNU6-517P-201ENST00000384362 110 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 RNU6-809P-201ENST00000384461 107 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 MIR660-201ENST00000385235 97 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AL355796.1-201ENST00000406706 323 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 RNU6-1186P-201ENST00000410429 97 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 C1DP2-201ENST00000418167 426 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.27□□□□□ -2.37
SCN3AQ9NY46 STAG3L5P-204ENST00000443759 179 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AC079781.2-201ENST00000446424 169 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 C1DP4-201ENST00000455429 424 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.27□□□□□ -2.37
SCN3AQ9NY46 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AL359075.3-201ENST00000613288 217 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AL139418.1-201ENST00000613613 177 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AL109933.3-201ENST00000619095 188 ntBASIC0.27□□□□□ -2.37
SCN3AQ9NY46 AC068792.1-201ENST00000621354 417 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 220.6 ms