Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 HMGB3P17-201ENST00000504195 649 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 SEPT14P8-201ENST00000508026 178 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-966P-201ENST00000516479 104 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-344P-201ENST00000516635 111 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 MIR3199-1-201ENST00000582434 88 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 AC023043.3-201ENST00000593113 385 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 SNORD27-201ENST00000363981 72 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 SNORA20.1-201ENST00000364790 130 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 MIR218-1-201ENST00000384999 110 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 SNORA48.8-201ENST00000391324 134 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 RN7SKP58-201ENST00000411010 305 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 SERF1AP1-201ENST00000514575 187 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 RNU2-44P-201ENST00000516795 194 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 AL133393.1-201ENST00000603277 287 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 SNORD11B-201ENST00000607707 90 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 AC093732.2-201ENST00000607950 274 ntBASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.11□□□□□ -1.91
PCIF1Q9H4Z3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 AC092593.1-201ENST00000515413 1815 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 AC010329.5-201ENST00000623497 2174 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.20-201ENST00000362479 113 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.101-201ENST00000363154 102 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-944P-201ENST00000364023 107 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 SNORD87-201ENST00000364849 89 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.478-201ENST00000384358 107 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.498-201ENST00000384460 102 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-851P-201ENST00000384565 107 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 MIR512-1-201ENST00000384913 84 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 AL603910.2-201ENST00000407268 136 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 AL390729.2-201ENST00000416137 156 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 RNU1-117P-201ENST00000517041 158 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 SCARNA3-201ENST00000517097 143 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-111P-201ENST00000517179 105 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 AC107016.2-201ENST00000547968 190 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 AC105245.1-201ENST00000581934 244 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 AC091932.3-201ENST00000624223 323 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 MIR7157-201ENST00000635801 60 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 IGHVIII-44-202ENST00000636235 289 ntBASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PCIF1Q9H4Z3 AC080128.1-201ENST00000474389 1917 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.331-201ENST00000365267 102 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.352-201ENST00000365439 102 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.539-201ENST00000384635 107 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.552-201ENST00000384665 112 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 MIR634-201ENST00000385208 97 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 NDUFB4P4-201ENST00000404822 243 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 Z92545.1-201ENST00000411782 234 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AL451074.5-201ENST00000415894 435 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 RPS29P6-201ENST00000438196 145 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AL135938.1-201ENST00000443141 297 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AC091826.1-201ENST00000514065 313 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 MIR449C-201ENST00000516047 92 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 SCARNA13-201ENST00000516672 275 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AL109918.3-201ENST00000603072 338 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AC022441.3-201ENST00000605737 136 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AC090115.4-201ENST00000609970 188 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 U2.14-201ENST00000615943 113 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AC068205.3-201ENST00000636385 468 ntBASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
PCIF1Q9H4Z3 AC135776.4-201ENST00000624300 1904 ntBASIC3.09□□□□□ -1.92
PCIF1Q9H4Z3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 AC096644.4-201ENST00000563417 2912 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 AL161431.1-201ENST00000618966 4205 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 RNU6-1266P-201ENST00000362794 105 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 SNORA72.2-201ENST00000365028 127 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 SNORD21-201ENST00000383953 95 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 Y_RNA.446-201ENST00000384178 104 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 MIR1289-1-201ENST00000408836 144 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 RPL19P1-201ENST00000411635 428 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 AC090515.1-201ENST00000465295 476 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 AC004467.1-201ENST00000615678 330 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 AC008264.2-201ENST00000610193 3731 ntBASIC3.08□□□□□ -1.92
PCIF1Q9H4Z3 AC108206.1-201ENST00000570186 4159 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 Y_RNA.54-201ENST00000362766 105 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 SNORA67.2-201ENST00000384300 149 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 SNORA53-201ENST00000391141 249 ntBASIC3.07□□□□□ -1.92
PCIF1Q9H4Z3 U6atac.2-201ENST00000408644 118 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms