Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 AC023932.2-201ENST00000603176 175 ntBASIC0.53□□□□□ -2.32
UPF3BQ9BZI7 AL139418.1-201ENST00000613613 177 ntBASIC0.53□□□□□ -2.32
UPF3BQ9BZI7 AC009878.1-201ENST00000621819 340 ntBASIC0.53□□□□□ -2.32
UPF3BQ9BZI7 Y_RNA.390-201ENST00000383932 102 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 RNU6-1242P-201ENST00000391052 103 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 AC090960.1-201ENST00000421072 306 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 AC010154.1-201ENST00000425857 269 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 AC074290.1-201ENST00000448883 135 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 USP9YP25-201ENST00000457708 443 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 BET1P1-201ENST00000482276 359 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 SNORA31.10-201ENST00000516482 106 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 RNU6-922P-201ENST00000516753 99 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 AC022616.3-201ENST00000523940 148 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 AL031281.1-201ENST00000604049 488 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 AC104458.1-201ENST00000608243 463 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 SNORA43.4-201ENST00000629559 138 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 CASC19-280ENST00000642102 1351 ntBASIC0.52□□□□□ -2.33
UPF3BQ9BZI7 Y_RNA.287-201ENST00000364853 94 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 RNU6-116P-201ENST00000384042 109 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 RNU6-163P-201ENST00000384396 106 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 Y_RNA.504-201ENST00000384481 104 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 MIR10B-201ENST00000385011 110 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 CETN4P-201ENST00000432407 469 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 MTND4P5-201ENST00000435821 1374 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 FABP5P4-201ENST00000437203 171 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 snoU109.3-201ENST00000459477 145 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 TRBVB-201ENST00000477100 408 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 RPS26P48-201ENST00000491713 339 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 AC018659.1-201ENST00000551083 169 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 MIR3941-201ENST00000582572 103 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 AL357312.1-201ENST00000603879 298 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 AC018645.2-201ENST00000609151 472 ntBASIC0.51□□□□□ -2.33
UPF3BQ9BZI7 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 Y_RNA.167-201ENST00000363735 109 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 RNU6-715P-201ENST00000365204 103 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 SNORA36A-201ENST00000384221 132 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 RNU6-83P-201ENST00000384568 112 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 RNU6-550P-201ENST00000391057 101 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 MIR1265-201ENST00000408444 86 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 RNU2-70P-201ENST00000410718 179 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 AL133217.1-201ENST00000450980 425 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 AC091874.1-201ENST00000511402 339 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 RNU4-57P-201ENST00000515980 135 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 RNU4-54P-201ENST00000516428 129 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 DEFB131C-201ENST00000528817 165 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 AC090049.2-201ENST00000550377 109 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 PCMTD1P2-201ENST00000565017 355 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 AC004584.2-201ENST00000570407 410 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 TCL6_2.1-201ENST00000615162 119 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 AC005562.2-201ENST00000618264 111 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 uc_338.11-201ENST00000619132 160 ntBASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.5□□□□□ -2.33
UPF3BQ9BZI7 RNU4-76P-201ENST00000364509 141 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 RNU4-12P-201ENST00000365233 139 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 RNU6-417P-201ENST00000384712 107 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 RNA5SP323-201ENST00000391094 133 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 RPS26P42-201ENST00000413485 326 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 AL606517.2-201ENST00000442855 241 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 AC016717.1-201ENST00000448918 286 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 RNU7-21P-201ENST00000459430 62 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 AC113410.1-201ENST00000505029 247 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 SNORA70.12-201ENST00000516084 153 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 RNU1-142P-201ENST00000516682 145 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 AC012557.2-201ENST00000605919 418 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 AL121992.2-201ENST00000606262 256 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 AC073349.3-201ENST00000617616 186 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 MIR8054-201ENST00000620877 86 ntBASIC0.49□□□□□ -2.33
UPF3BQ9BZI7 RNU6-660P-201ENST00000364566 109 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 RNU6-1303P-201ENST00000364841 107 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 MIR329-2-201ENST00000385029 84 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 MIR660-201ENST00000385235 97 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 RNU6-1093P-201ENST00000391194 107 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 RNA5SP467-201ENST00000391274 118 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 AL034345.1-201ENST00000407768 123 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 NFU1P2-201ENST00000448700 469 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 AC022364.2-201ENST00000457963 554 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 RNU7-90P-201ENST00000459216 62 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 AC079382.1-201ENST00000493346 557 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 Y_RNA.672-201ENST00000516289 104 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 AL607023.1-201ENST00000620045 248 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 AC011155.2-201ENST00000623202 216 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 AC022418.1-201ENST00000624118 445 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 U6.114-201ENST00000636407 96 ntBASIC0.48□□□□□ -2.33
UPF3BQ9BZI7 RNU6-501P-201ENST00000364072 100 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 MIR586-201ENST00000385035 97 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 SNORD41-201ENST00000386967 70 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 MIR1253-201ENST00000408273 105 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms