Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 SNORA67.5-201ENST00000391036 107 ntBASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 AC008134.1-201ENST00000420943 193 ntBASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 RPS29P23-201ENST00000458635 123 ntBASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 Y_RNA.665-201ENST00000516177 98 ntBASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 ZNF519P2-201ENST00000557032 169 ntBASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 AC146944.4-201ENST00000602697 718 ntBASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 AC016727.2-201ENST00000603988 621 ntBASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 AC008873.1-201ENST00000625051 138 ntBASIC2.23□□□□□ -2.05
CHMP4AQ9BY43 RNU4-40P-201ENST00000364351 143 ntBASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 RNU6-1065P-201ENST00000384513 106 ntBASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 AL117342.1-201ENST00000404861 406 ntBASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 NDUFA5P4-201ENST00000436704 385 ntBASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 snoU13.27-201ENST00000459278 104 ntBASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 RPS26P55-201ENST00000471178 356 ntBASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 RNU6-1041P-201ENST00000516254 102 ntBASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 MTND1P35-201ENST00000526739 508 ntBASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.22□□□□□ -2.05
CHMP4AQ9BY43 snoU2-30.2-201ENST00000362805 70 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 RNU6-451P-201ENST00000362921 107 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 RNU6-254P-201ENST00000363377 107 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 RNU6-137P-201ENST00000363680 108 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 RNY3P3-201ENST00000363816 102 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 COX6CP10-201ENST00000416832 224 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 MTND3P21-201ENST00000433774 331 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 AC003989.2-201ENST00000440224 169 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 DAP3P1-201ENST00000441522 278 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 AC005908.1-201ENST00000468701 347 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 RPS29P11-201ENST00000496507 171 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 RAB11AP2-201ENST00000545905 639 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 RRN3P3-201ENST00000549207 578 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 AC024614.2-201ENST00000577584 372 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 AL133215.3-201ENST00000609801 448 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 AL161722.3-201ENST00000605789 2983 ntBASIC2.21□□□□□ -2.06
CHMP4AQ9BY43 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 MIR181A1-201ENST00000385026 110 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 RNU6-332P-201ENST00000391193 108 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 CYCSP49-201ENST00000420810 319 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 AC079140.2-201ENST00000506193 142 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 DEFB131C-201ENST00000528817 165 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 AC109635.3-201ENST00000529536 185 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 AC016957.1-201ENST00000534895 309 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 MIR3976-201ENST00000606807 139 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 RMST_3.1-201ENST00000611651 109 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 AL353997.5-201ENST00000618886 171 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 SCARNA4-201ENST00000629045 128 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 MIR338-201ENST00000636369 67 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 MTND5P35-201ENST00000557537 1720 ntBASIC2.2□□□□□ -2.06
CHMP4AQ9BY43 AC100821.1-201ENST00000523153 2479 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 SNORD113-7-201ENST00000363762 77 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 SNORD115-8-201ENST00000363856 82 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 Y_RNA.256-201ENST00000364594 104 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 SNORD115-38-201ENST00000365037 82 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 Y_RNA.402-201ENST00000383972 102 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 RNU6-418P-201ENST00000384035 107 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 RNU6-790P-201ENST00000384479 105 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 AC060773.1-201ENST00000421698 310 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 AL353572.1-201ENST00000442490 417 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 snoU13.30-201ENST00000458951 104 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 HMGN2P26-201ENST00000463169 339 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 HMGN2P9-201ENST00000476875 229 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 RNA5SP384-201ENST00000516615 116 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 AL078596.1-201ENST00000624856 447 ntBASIC2.19□□□□□ -2.06
CHMP4AQ9BY43 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 SNORD115-32-201ENST00000364079 82 ntBASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 RNU6-997P-201ENST00000384725 107 ntBASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 AL627390.1-201ENST00000396055 340 ntBASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 AC007098.1-201ENST00000420122 367 ntBASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 RNA5SP437-201ENST00000517249 129 ntBASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 AC104581.2-201ENST00000572227 430 ntBASIC2.18□□□□□ -2.06
CHMP4AQ9BY43 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 MIR302D-201ENST00000362275 68 ntBASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 Y_RNA.3-201ENST00000362331 103 ntBASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 RNU6-534P-201ENST00000364877 106 ntBASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 Y_RNA.554-201ENST00000384672 102 ntBASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 MIR764-201ENST00000390811 85 ntBASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 MIR1253-201ENST00000408273 105 ntBASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 RNU7-187P-201ENST00000458985 68 ntBASIC2.17□□□□□ -2.06
CHMP4AQ9BY43 RNU6-720P-201ENST00000516363 108 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms