Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RNU6-1158P-201ENST00000391167 107 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 MIR1283-1-201ENST00000408494 87 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.84□□□□□ -2.27
LMX1AQ8TE12 MTCYBP8-201ENST00000422855 651 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 MTCO2P19-201ENST00000427513 598 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AL358934.1-201ENST00000432346 324 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 USP9YP28-201ENST00000435142 589 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.84□□□□□ -2.27
LMX1AQ8TE12 MTCO2P18-201ENST00000457151 658 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.84□□□□□ -2.27
LMX1AQ8TE12 RNU6-1037P-201ENST00000459571 107 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AL163973.1-201ENST00000484753 577 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AC010486.2-201ENST00000505572 483 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AC011406.1-201ENST00000512440 370 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 LRRC34P1-201ENST00000542742 915 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.84□□□□□ -2.27
LMX1AQ8TE12 MIR3937-201ENST00000580135 106 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 NIFKP6-201ENST00000598115 845 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AL391646.1-201ENST00000603860 190 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AC103810.9-201ENST00000606688 112 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AC091931.1-201ENST00000623488 728 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 AC100821.1-201ENST00000523153 2479 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNU6-227P-201ENST00000362865 103 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNU6-82P-201ENST00000363970 107 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNU6-418P-201ENST00000384035 107 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 SNORA29-201ENST00000384183 140 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNU6-1065P-201ENST00000384513 106 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 SNORD73A-201ENST00000386062 65 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNU6-1093P-201ENST00000391194 107 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.83□□□□□ -2.28
LMX1AQ8TE12 MTCO3P29-201ENST00000432119 779 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AC069257.2-201ENST00000441819 155 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 MTND1P27-201ENST00000451117 902 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AC007215.1-201ENST00000464893 276 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 MTCO3P38-201ENST00000468910 766 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNA5SP436-201ENST00000516020 115 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNU6-1041P-201ENST00000516254 102 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNU6-1069P-201ENST00000516612 133 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 RNU6-612P-201ENST00000516909 102 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 Y_RNA.717-201ENST00000517106 92 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 MTND4P7-201ENST00000523876 130 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.83□□□□□ -2.28
LMX1AQ8TE12 HMGB1P33-201ENST00000563485 527 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 SNORA59B-202ENST00000578183 701 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AC040904.1-201ENST00000590850 223 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 FAM71BP1-201ENST00000604431 523 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AC087752.4-201ENST00000605911 462 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AL020996.3-201ENST00000606617 222 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 uc_338.34-201ENST00000617467 174 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AC126177.8-201ENST00000618339 1015 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AC103705.1-201ENST00000619013 241 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AL391516.1-201ENST00000554380 2449 ntBASIC0.83□□□□□ -2.28
LMX1AQ8TE12 AC009541.1-201ENST00000438279 2662 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU6-534P-201ENST00000364877 106 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU6-877P-201ENST00000383868 107 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 SNORA75-201ENST00000384158 137 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU6-17P-201ENST00000384245 107 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU6-975P-201ENST00000384296 105 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU6-1026P-201ENST00000384465 108 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU6-18P-201ENST00000384527 107 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU6-1235P-201ENST00000384559 107 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AC092447.3-201ENST00000426027 686 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AL445305.1-201ENST00000432577 575 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 USP9YP29-201ENST00000445112 563 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.82□□□□□ -2.28
LMX1AQ8TE12 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU7-63P-201ENST00000459054 62 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU6-498P-201ENST00000459468 107 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 SNORD116-28-201ENST00000516123 91 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 RNU7-40P-201ENST00000516397 64 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AC011712.1-201ENST00000588959 234 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AC008536.2-201ENST00000607284 349 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AC064836.2-201ENST00000609491 462 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AC108706.1-201ENST00000611053 297 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 TCL6_2.1-201ENST00000615162 119 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AC009509.4-201ENST00000619202 509 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 AC139792.3-201ENST00000623525 224 ntBASIC0.82□□□□□ -2.28
LMX1AQ8TE12 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
LMX1AQ8TE12 Y_RNA.169-201ENST00000363745 96 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 SNORA67.2-201ENST00000384300 149 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 RNU6-1105P-201ENST00000384774 107 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.81□□□□□ -2.28
LMX1AQ8TE12 RNU2-7P-201ENST00000410794 178 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC004866.1-201ENST00000411748 78 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AL353193.1-201ENST00000421444 268 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.81□□□□□ -2.28
LMX1AQ8TE12 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC0.81□□□□□ -2.28
LMX1AQ8TE12 snoU13.27-201ENST00000459278 104 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AL133373.1-201ENST00000497098 94 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 RPL39P5-202ENST00000512505 151 ntBASIC0.81□□□□□ -2.28
LMX1AQ8TE12 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
LMX1AQ8TE12 AC025465.4-201ENST00000513422 638 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms