Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 SNORA31.10-201ENST00000516482 106 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 RNA5SP168-201ENST00000516642 112 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 AP003484.1-201ENST00000530974 250 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 MIR548AB-201ENST00000584917 84 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 MIR4753-201ENST00000585119 83 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 RSL24D1P11-201ENST00000591045 491 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 MIR98-201ENST00000606724 119 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 uc_338.11-201ENST00000619132 160 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 AL603839.4-201ENST00000624658 1005 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 MTND4P4-201ENST00000439033 1366 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 AC068700.1-201ENST00000565862 3754 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 RNU4-28P-201ENST00000364739 141 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 RNU6-417P-201ENST00000384712 107 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 RNU6-1031P-201ENST00000384773 107 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 RNA5SP467-201ENST00000391274 118 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 RNU6-1054P-201ENST00000411293 104 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 AC011233.1-201ENST00000422812 283 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 AC010154.1-201ENST00000425857 269 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 snoU13.6-201ENST00000458785 104 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 SCARNA18-201ENST00000459004 134 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 AC079140.5-201ENST00000507882 310 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 AC024995.1-201ENST00000523014 93 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 DEFB108E-201ENST00000524692 240 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 MIR5695-201ENST00000579717 85 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 AC005730.3-201ENST00000583067 366 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 AC005562.2-201ENST00000618264 111 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 uc_338.17-201ENST00000619633 179 ntBASIC0.64□□□□□ -2.31
CCDC112Q8NEF3 SNORD114-24-201ENST00000365029 72 ntBASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 Y_RNA.399-201ENST00000383955 105 ntBASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 RPS26P5-201ENST00000418544 335 ntBASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 RNU6-323P-201ENST00000521915 107 ntBASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 AC004812.1-201ENST00000540773 146 ntBASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 AL390123.1-201ENST00000603216 237 ntBASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 AC004223.4-201ENST00000612426 332 ntBASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 U6.108-201ENST00000637764 58 ntBASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.63□□□□□ -2.31
CCDC112Q8NEF3 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 RNU4-79P-201ENST00000362764 141 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 Y_RNA.124-201ENST00000363339 93 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 RNU4-48P-201ENST00000365559 182 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 MIR193B-201ENST00000384907 83 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 RNU6-910P-201ENST00000390844 107 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC004866.1-201ENST00000411748 78 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 Z99497.1-201ENST00000421282 135 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC002429.1-201ENST00000437672 148 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC004386.2-201ENST00000441858 148 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AL157398.1-201ENST00000452981 186 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 GMFBP1-201ENST00000467831 427 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC048334.1-201ENST00000477975 159 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 TRBVA-201ENST00000498804 316 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 SNORA31.2-201ENST00000516019 134 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 RNU6-1146P-201ENST00000516282 102 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 RNU6-1069P-201ENST00000516612 133 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC090142.3-201ENST00000519012 385 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC016256.1-201ENST00000547971 354 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 MIR3682-201ENST00000581338 84 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 TCL6_2.1-201ENST00000615162 119 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 MIR5087-201ENST00000635826 76 ntBASIC0.62□□□□□ -2.31
CCDC112Q8NEF3 SNORD114-23-201ENST00000363536 72 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 Y_RNA.205-201ENST00000364128 113 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 Y_RNA.363-201ENST00000365529 113 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 RNU6-925P-201ENST00000384629 104 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 MIR549A-201ENST00000385268 96 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 SNORA12.1-201ENST00000390873 148 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 MIR936-201ENST00000401264 98 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AC063976.4-201ENST00000421971 163 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 TIMM9P3-201ENST00000428659 274 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 RPL31P35-201ENST00000431058 377 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 MTCO2P3-201ENST00000442543 421 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 NFU1P2-201ENST00000448700 469 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 MTND3P3-201ENST00000505004 126 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AC005178.1-201ENST00000508392 440 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 MIR5006-201ENST00000583027 110 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AC022432.1-201ENST00000595739 310 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AC022217.4-201ENST00000604389 163 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AC006566.1-201ENST00000608943 513 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AC006001.4-201ENST00000622243 395 ntBASIC0.61□□□□□ -2.31
CCDC112Q8NEF3 AC009541.1-201ENST00000438279 2662 ntBASIC0.6□□□□□ -2.31
CCDC112Q8NEF3 RNU6-950P-201ENST00000384651 107 ntBASIC0.6□□□□□ -2.31
CCDC112Q8NEF3 AC016909.1-201ENST00000415916 166 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 153.3 ms