Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.44-201ENST00000362676 108 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 RNA5SP387-201ENST00000364226 106 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 RNU6-1240P-201ENST00000365155 104 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.361-201ENST00000365515 120 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 RNU6-160P-201ENST00000384591 107 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 MTCO1P5-201ENST00000433573 344 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 RPL21P129-201ENST00000491732 478 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 AC010598.1-201ENST00000510378 103 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 AP003730.1-201ENST00000524605 285 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 AC008745.1-201ENST00000604064 271 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 BX284668.6-201ENST00000606899 438 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 MIR6716-201ENST00000613413 80 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CLRN3Q8NCR9 AP006437.1-201ENST00000641440 3685 ntBASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.20-201ENST00000362479 113 ntBASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 SNORA62-201ENST00000365493 153 ntBASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.477-201ENST00000384352 108 ntBASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 AC106785.1-201ENST00000565935 262 ntBASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 MIR3126-201ENST00000577443 74 ntBASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 DEFB117-201ENST00000602356 141 ntBASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 AC096577.2-201ENST00000611455 153 ntBASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CLRN3Q8NCR9 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 RNU1-70P-201ENST00000362618 164 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.54-201ENST00000362766 105 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.60-201ENST00000362831 98 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 RNU4-80P-201ENST00000363200 141 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 RNU6-379P-201ENST00000363813 104 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 RNU1-91P-201ENST00000364746 163 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 MIR873-201ENST00000401120 77 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 AL603910.2-201ENST00000407268 136 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 AC010154.1-201ENST00000425857 269 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 RNU1-131P-201ENST00000458943 161 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 AC091959.1-201ENST00000495857 238 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 RNU6-1146P-201ENST00000516282 102 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 RNA5SP164-201ENST00000516533 110 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
CLRN3Q8NCR9 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC2.71□□□□□ -1.97
CLRN3Q8NCR9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.71□□□□□ -1.97
CLRN3Q8NCR9 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 SNORA70C-201ENST00000384538 135 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 Y_RNA.552-201ENST00000384665 112 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 MIR29C-201ENST00000385231 88 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 MIR1262-201ENST00000408276 93 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 SNORD88.1-201ENST00000408684 91 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 SNORD65B-201ENST00000459126 73 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AP001486.1-201ENST00000463339 476 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 RN7SL594P-201ENST00000470590 287 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 RPL7P49-201ENST00000471402 708 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 RPS27AP9-201ENST00000477681 438 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 MTND1P19-201ENST00000511780 315 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 Y_RNA.673-201ENST00000516306 88 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 SNORA31.9-201ENST00000516429 84 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 Y_RNA.680-201ENST00000516441 93 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 SNORA27.4-201ENST00000516650 95 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 RNU6-826P-201ENST00000516827 104 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 MIR2116-201ENST00000517221 80 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AC022695.1-201ENST00000522089 237 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 MIR3145-201ENST00000580727 82 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 ARF4P1-201ENST00000605447 541 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AL445567.2-201ENST00000618935 498 ntBASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.71□□□□□ -1.98
CLRN3Q8NCR9 AC017071.1-201ENST00000564407 2204 ntBASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 UBE2WP1-201ENST00000362030 340 ntBASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 MIR340-201ENST00000362125 95 ntBASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 SNORD27-201ENST00000363981 72 ntBASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 SNORA20B-201ENST00000384220 132 ntBASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 RNU1-148P-201ENST00000384472 162 ntBASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 MIR1253-201ENST00000408273 105 ntBASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.7□□□□□ -1.98
CLRN3Q8NCR9 AC025750.2-201ENST00000442609 450 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 161.1 ms