Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AP003357.1-201ENST00000604497 148 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 MIR6798-201ENST00000612887 67 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.4□□□□□ -1.86
UBE3DQ7Z6J8 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
UBE3DQ7Z6J8 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 Y_RNA.71-201ENST00000362892 104 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 Y_RNA.218-201ENST00000364218 104 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-215P-201ENST00000365169 102 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-1323P-201ENST00000384025 107 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 Y_RNA.572-201ENST00000384757 98 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 MIR134-201ENST00000385258 73 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 SNORA12-201ENST00000391162 147 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 HSPE1P21-201ENST00000438283 308 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 RPS27P1-201ENST00000450552 247 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 RBMY2UP-201ENST00000453474 324 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 RNU7-197P-201ENST00000458836 62 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 RNA5SP272-201ENST00000516095 111 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-971P-201ENST00000516920 106 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 MIR4738-201ENST00000579134 87 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 CR392039.5-201ENST00000623201 510 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 AP001340.1-201ENST00000624405 217 ntBASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.4□□□□□ -1.87
UBE3DQ7Z6J8 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 SNORA73.2-201ENST00000364946 201 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 Y_RNA.393-201ENST00000383936 102 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-1083P-201ENST00000384022 107 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 SNORA5A-201ENST00000384111 134 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 MIR518C-201ENST00000384822 101 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 AC002075.2-201ENST00000425207 252 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 AC006989.1-201ENST00000427212 131 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 HMGN2P31-201ENST00000432430 273 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-1098P-201ENST00000516772 96 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 RNU1-45P-201ENST00000517191 141 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 AC103810.1-201ENST00000579873 453 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 MIR4753-201ENST00000585119 83 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 RPL30P11-203ENST00000598995 310 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 AC006435.5-201ENST00000624486 112 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 snoZ196.1-201ENST00000625269 89 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 AC012442.3-202ENST00000636742 206 ntBASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
UBE3DQ7Z6J8 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 GABRG2-229ENST00000641017 3628 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 SNORA27.1-201ENST00000362604 124 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 U8.7-201ENST00000364940 136 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-407P-201ENST00000365280 104 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 RNA5SP496-201ENST00000391240 109 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 MIR1294-201ENST00000408503 142 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 SNORA36B-201ENST00000410438 131 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 RPS29P31-201ENST00000446147 164 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 RPS26P55-201ENST00000471178 356 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 AC010598.1-201ENST00000510378 103 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 AC104619.4-201ENST00000510773 249 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 AC127455.1-201ENST00000565496 145 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 AC034105.4-201ENST00000568304 277 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 AC012640.5-201ENST00000623897 319 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 MIR6844-201ENST00000637122 62 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 CEP170P1-201ENST00000502249 4587 ntBASIC3.38□□□□□ -1.87
UBE3DQ7Z6J8 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 AC068647.1-201ENST00000489539 2265 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-486P-201ENST00000363116 107 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 SNORA75.5-201ENST00000391291 81 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 AL139095.1-201ENST00000404326 391 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 RNU6ATAC-201ENST00000408749 126 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 AL121890.1-201ENST00000435457 205 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 AL133547.1-201ENST00000448546 220 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-221P-201ENST00000459541 99 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 SNRPGP3-201ENST00000469405 227 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 RNU6-1337P-201ENST00000516525 95 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 AC023632.4-201ENST00000517783 191 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 AC026333.2-201ENST00000542164 106 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 MIR5047-201ENST00000579212 100 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 MIR4765-201ENST00000585007 77 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 U4.6-201ENST00000621618 127 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 AC068647.2-201ENST00000637380 353 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 AC009093.8-201ENST00000641769 292 ntBASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
UBE3DQ7Z6J8 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
UBE3DQ7Z6J8 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
UBE3DQ7Z6J8 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
UBE3DQ7Z6J8 Y_RNA.261-201ENST00000364631 102 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 210.8 ms