Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 MIR3976-201ENST00000606807 139 ntBASIC1.26□□□□□ -2.21
TRIM40Q6P9F5 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.26□□□□□ -2.21
TRIM40Q6P9F5 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.26□□□□□ -2.21
TRIM40Q6P9F5 AC068137.3-201ENST00000639191 341 ntBASIC1.26□□□□□ -2.21
TRIM40Q6P9F5 SNORA7.1-201ENST00000363750 139 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 RNU6-784P-201ENST00000384330 106 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 RNU6-933P-201ENST00000384424 107 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 MIR521-1-201ENST00000384902 87 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 RNU1-78P-201ENST00000391248 165 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC004866.1-201ENST00000411748 78 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 RPL23AP36-201ENST00000413895 458 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 CST2P1-201ENST00000425770 87 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 MTCO3P29-201ENST00000432119 779 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 ERLEC1P1-201ENST00000433806 578 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 HSPE1P24-201ENST00000450782 238 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 RPS29P23-201ENST00000458635 123 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC007215.1-201ENST00000464893 276 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC107401.1-201ENST00000503426 685 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 RNA5SP384-201ENST00000516615 116 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 RNA5SP481-201ENST00000516814 122 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AL512360.1-201ENST00000555346 234 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC016727.1-205ENST00000605437 569 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 AC126177.8-201ENST00000618339 1015 ntBASIC1.25□□□□□ -2.21
TRIM40Q6P9F5 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 RNU6-271P-201ENST00000363858 105 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 RNU6-975P-201ENST00000384296 105 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 RNU6-1235P-201ENST00000384559 107 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 MIR549A-201ENST00000385268 96 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 MIR450B-201ENST00000401182 78 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 RNU6-1068P-201ENST00000410958 103 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 SEPT14P3-201ENST00000439401 183 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 AC069257.2-201ENST00000441819 155 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 AL732372.2-207ENST00000445840 183 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 NFU1P2-201ENST00000448700 469 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 SEPT14P2-201ENST00000453405 183 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 MTCO3P8-201ENST00000453691 755 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 RNU6-498P-201ENST00000459468 107 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 AC114982.1-201ENST00000469402 321 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 AL163540.1-201ENST00000485382 386 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 AC083904.1-201ENST00000487828 231 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 SEPT14P4-201ENST00000513445 186 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 RNU6-948P-201ENST00000516374 107 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 FO082796.1-201ENST00000523795 183 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 RRN3P3-201ENST00000549207 578 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 AC026371.1-201ENST00000551867 419 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 NBR2-204ENST00000587322 63 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 AC146944.4-201ENST00000602697 718 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 OR4G1P-203ENST00000641984 1631 ntBASIC1.24□□□□□ -2.21
TRIM40Q6P9F5 MTND4P5-201ENST00000435821 1374 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AC100821.1-201ENST00000523153 2479 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 MIR302D-201ENST00000362275 68 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 MIR548B-201ENST00000385247 97 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 SDAD1P3-201ENST00000427380 333 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 Z82205.1-201ENST00000428456 297 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 MTND1P29-201ENST00000448112 647 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AC245517.4-201ENST00000448601 281 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AC016717.1-201ENST00000448918 286 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AC019235.1-201ENST00000503847 207 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AP003033.1-201ENST00000527244 415 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 PIGPP4-201ENST00000584447 307 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 SNRPGP20-201ENST00000604477 205 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AP001485.1-201ENST00000604799 199 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AL133215.3-201ENST00000609801 448 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 AC137590.2-201ENST00000619709 240 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 MIR338-201ENST00000636369 67 ntBASIC1.23□□□□□ -2.21
TRIM40Q6P9F5 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 ICE2P2-201ENST00000483823 2787 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AL161722.3-201ENST00000605789 2983 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 SNORD113-7-201ENST00000363762 77 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 RNU6-128P-201ENST00000383976 107 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 MIR586-201ENST00000385035 97 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 SNORA40.6-201ENST00000391153 128 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 RNU2-16P-201ENST00000410712 136 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AC004965.1-201ENST00000413033 213 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AC015922.2-201ENST00000435593 184 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 RPS26P55-201ENST00000471178 356 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AC004223.1-201ENST00000479840 271 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 RNA5SP445-201ENST00000515889 115 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 MTND1P35-201ENST00000526739 508 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms