Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-908P-201ENST00000410160 94 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 EBAG9P1-201ENST00000418955 543 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 JTBP1-201ENST00000441314 247 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 NFU1P2-201ENST00000448700 469 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 HSPE1P24-201ENST00000450782 238 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 RNU7-187P-201ENST00000458985 68 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 RPL36AP21-201ENST00000490372 323 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 MTND1P35-201ENST00000526739 508 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 AL353149.1-201ENST00000610667 244 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 AL161722.3-201ENST00000605789 2983 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 U8.1-201ENST00000362843 134 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 RNU6-271P-201ENST00000363858 105 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 Y_RNA.373-201ENST00000365600 103 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 RNU6-128P-201ENST00000383976 107 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 RNU6-975P-201ENST00000384296 105 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 Y_RNA.559-201ENST00000384686 107 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 MIR487A-201ENST00000385009 80 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 SNORA67.5-201ENST00000391036 107 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 Y_RNA.615-201ENST00000410769 117 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 NDUFA5P4-201ENST00000436704 385 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 RPL23AP75-201ENST00000491601 451 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 RNU6-948P-201ENST00000516374 107 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 AL160236.1-201ENST00000556317 195 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 MIR4769-201ENST00000584126 77 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 AC103591.3-201ENST00000608684 209 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 SCARNA4-201ENST00000629045 128 ntBASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.53□□□□□ -2.16
CCDC40Q4G0X9 MTND4P5-201ENST00000435821 1374 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 Y_RNA.140-201ENST00000363474 103 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 RNU6-1235P-201ENST00000384559 107 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 CST2P1-201ENST00000425770 87 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 SDAD1P3-201ENST00000427380 333 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 MTCO3P29-201ENST00000432119 779 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 MTND2P22-201ENST00000444325 1033 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 MTND1P1-201ENST00000445453 368 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 RNU6-498P-201ENST00000459468 107 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 AC016957.1-201ENST00000534895 309 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 AC024909.2-201ENST00000553035 286 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 SNRPGP20-201ENST00000604477 205 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 AC095038.3-201ENST00000634439 195 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 MIR338-201ENST00000636369 67 ntBASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.52□□□□□ -2.17
CCDC40Q4G0X9 AC100821.1-201ENST00000523153 2479 ntBASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 SNORD50.1-201ENST00000362987 71 ntBASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 Z83846.1-201ENST00000446798 265 ntBASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 AC114982.1-201ENST00000469402 321 ntBASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 RNA5SP481-201ENST00000516814 122 ntBASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 PRR13P7-201ENST00000605538 430 ntBASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 AC137590.2-201ENST00000619709 240 ntBASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
CCDC40Q4G0X9 MIR302D-201ENST00000362275 68 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 RNU6-1252P-201ENST00000363054 104 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 Y_RNA.151-201ENST00000363566 112 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 RNU6-457P-201ENST00000363999 107 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 RNU6-1305P-201ENST00000364353 104 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 RNU6-203P-201ENST00000384038 104 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 U8.10-201ENST00000384260 133 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 MIR586-201ENST00000385035 97 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 SNORA17.3-201ENST00000391159 129 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 FTH1P12-201ENST00000432137 551 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 AC079354.2-201ENST00000453523 154 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 RPS29P23-201ENST00000458635 123 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 HMGN2P26-201ENST00000463169 339 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 ZNF519P2-201ENST00000557032 169 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 MIR4303-201ENST00000581299 66 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 AC048344.4-201ENST00000619744 527 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 ZNF204P-201ENST00000416749 2397 ntBASIC1.5□□□□□ -2.17
CCDC40Q4G0X9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 Y_RNA.38-201ENST00000362617 102 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 RNU6-451P-201ENST00000362921 107 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 Y_RNA.194-201ENST00000363985 102 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 Y_RNA.256-201ENST00000364594 104 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 RNU6-790P-201ENST00000384479 105 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 AC069257.2-201ENST00000441819 155 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 AC245517.4-201ENST00000448601 281 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 RPS26P55-201ENST00000471178 356 ntBASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC40Q4G0X9 RNA5SP445-201ENST00000515889 115 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms