Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC098869.1-201ENST00000481627 292 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1069P-201ENST00000516612 133 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-448P-201ENST00000517052 107 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 OR8K2P-201ENST00000524645 927 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC068587.4-201ENST00000533893 186 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC093023.1-201ENST00000547375 507 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 HIGD1AP17-201ENST00000554576 276 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC137800.2-201ENST00000574375 120 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC010525.2-201ENST00000590920 195 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC073539.2-201ENST00000597113 165 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL391001.1-201ENST00000602747 715 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL353778.1-201ENST00000603149 408 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL596327.1-201ENST00000603629 213 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL031281.1-201ENST00000604049 488 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 Z94722.1-201ENST00000604328 474 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL034555.1-201ENST00000604816 211 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC112204.3-201ENST00000623822 332 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC068647.2-201ENST00000637380 353 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 CASC19-280ENST00000642102 1351 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-0.01□□□□□ -2.41
COL7A1Q02388 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-376P-201ENST00000384731 106 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-903P-201ENST00000391270 109 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 CBX3P9-201ENST00000402326 552 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 SNORD75.1-201ENST00000408373 60 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1186P-201ENST00000410429 97 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-994P-201ENST00000410507 111 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU4-46P-201ENST00000410818 138 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL592310.1-201ENST00000414330 671 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 UBE2V1P10-201ENST00000414685 269 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 MTCO3P41-201ENST00000414801 328 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 TRIM60P10Y-201ENST00000425589 751 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 MTND4LP14-201ENST00000429447 288 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 SNRPGP14-201ENST00000435400 219 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 MTND4P15-201ENST00000437913 1033 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 COX7BP2-201ENST00000437976 242 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 snoU109.2-201ENST00000459316 135 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC007547.1-201ENST00000462177 490 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 HMGN1P12-201ENST00000499125 195 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 MTCO3P7-201ENST00000510008 774 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-377P-201ENST00000515965 102 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1315P-201ENST00000517187 99 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC024995.1-201ENST00000523014 93 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC023442.1-201ENST00000531247 422 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC092325.1-201ENST00000566449 554 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL390123.1-201ENST00000603216 237 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC034229.4-201ENST00000607861 441 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL391903.3-201ENST00000612158 163 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC016911.1-201ENST00000613297 452 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC009032.1-201ENST00000617574 431 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC024940.5-201ENST00000622889 474 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC099654.8-201ENST00000637757 681 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 SNORD56.1-201ENST00000362913 68 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 Y_RNA.287-201ENST00000364853 94 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 RNY3P13-201ENST00000365542 102 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 SNORA32.2-201ENST00000384049 122 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 RNU6-331P-201ENST00000384724 107 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 RNA5SP323-201ENST00000391094 133 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AL049545.1-201ENST00000401856 572 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 RAP1BP3-201ENST00000407180 549 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC015818.7-201ENST00000428754 109 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 MTCO3P29-201ENST00000432119 779 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 TPTE2P1-204ENST00000435256 593 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AL008629.1-201ENST00000438615 184 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC087499.7-201ENST00000441958 109 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC109327.2-201ENST00000448339 378 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 CECR9-201ENST00000453421 199 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC013470.1-201ENST00000453438 462 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 RNU6-333P-201ENST00000459117 107 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 RPS23P5-201ENST00000495419 428 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC109445.1-201ENST00000512356 383 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 RNU6-1102P-201ENST00000516149 96 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 RNU6-947P-201ENST00000516264 106 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 RNU6-143P-201ENST00000516942 93 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-0.02□□□□□ -2.41
COL7A1Q02388 LRRC6P1-201ENST00000532188 885 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 NACAP3-201ENST00000552100 481 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 RPL21P9-201ENST00000556149 474 ntBASIC-0.02□□□□□ -2.41
COL7A1Q02388 AC012414.2-201ENST00000559474 187 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms