Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 PRELID3BP1-201ENST00000457142 540 ntBASIC2.05□□□□□ -2.08
PDX1P52945 RN7SKP210-201ENST00000459176 261 ntBASIC2.05□□□□□ -2.08
PDX1P52945 RPL23AP42-201ENST00000471152 471 ntBASIC2.05□□□□□ -2.08
PDX1P52945 AC104435.1-201ENST00000483483 166 ntBASIC2.05□□□□□ -2.08
PDX1P52945 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.05□□□□□ -2.08
PDX1P52945 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.05□□□□□ -2.08
PDX1P52945 UBL5P4-201ENST00000562584 236 ntBASIC2.05□□□□□ -2.08
PDX1P52945 AC104581.2-201ENST00000572227 430 ntBASIC2.05□□□□□ -2.08
PDX1P52945 MIR5690-201ENST00000583739 73 ntBASIC2.05□□□□□ -2.08
PDX1P52945 C8orf59P2-201ENST00000603441 271 ntBASIC2.05□□□□□ -2.08
PDX1P52945 RMST_6.1-201ENST00000611980 203 ntBASIC2.05□□□□□ -2.08
PDX1P52945 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.05□□□□□ -2.08
PDX1P52945 AC005562.2-201ENST00000618264 111 ntBASIC2.05□□□□□ -2.08
PDX1P52945 AL353997.5-201ENST00000618886 171 ntBASIC2.05□□□□□ -2.08
PDX1P52945 AC104985.2-201ENST00000620598 500 ntBASIC2.05□□□□□ -2.08
PDX1P52945 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.05□□□□□ -2.08
PDX1P52945 ZNF204P-201ENST00000416749 2397 ntBASIC2.05□□□□□ -2.08
PDX1P52945 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
PDX1P52945 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
PDX1P52945 RNU1-76P-201ENST00000362903 159 ntBASIC2.04□□□□□ -2.08
PDX1P52945 RNU6-611P-201ENST00000384276 104 ntBASIC2.04□□□□□ -2.08
PDX1P52945 MIR153-2-201ENST00000385225 87 ntBASIC2.04□□□□□ -2.08
PDX1P52945 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.04□□□□□ -2.08
PDX1P52945 EDDM3CP-201ENST00000415977 425 ntBASIC2.04□□□□□ -2.08
PDX1P52945 WARS2P1-201ENST00000429678 537 ntBASIC2.04□□□□□ -2.08
PDX1P52945 AL445646.1-201ENST00000431784 216 ntBASIC2.04□□□□□ -2.08
PDX1P52945 RPL23AP50-201ENST00000434149 455 ntBASIC2.04□□□□□ -2.08
PDX1P52945 MTCO3P8-201ENST00000453691 755 ntBASIC2.04□□□□□ -2.08
PDX1P52945 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.04□□□□□ -2.08
PDX1P52945 ELOCP24-201ENST00000456370 334 ntBASIC2.04□□□□□ -2.08
PDX1P52945 RNU7-152P-201ENST00000458982 64 ntBASIC2.04□□□□□ -2.08
PDX1P52945 AC007215.1-201ENST00000464893 276 ntBASIC2.04□□□□□ -2.08
PDX1P52945 AP000870.1-201ENST00000472927 406 ntBASIC2.04□□□□□ -2.08
PDX1P52945 AC022493.2-201ENST00000506122 481 ntBASIC2.04□□□□□ -2.08
PDX1P52945 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.04□□□□□ -2.08
PDX1P52945 RNU6-295P-201ENST00000516901 104 ntBASIC2.04□□□□□ -2.08
PDX1P52945 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.04□□□□□ -2.08
PDX1P52945 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.04□□□□□ -2.08
PDX1P52945 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.04□□□□□ -2.08
PDX1P52945 AC005899.2-201ENST00000584353 90 ntBASIC2.04□□□□□ -2.08
PDX1P52945 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.04□□□□□ -2.08
PDX1P52945 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.04□□□□□ -2.08
PDX1P52945 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
PDX1P52945 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
PDX1P52945 RNU6-1159P-201ENST00000362933 107 ntBASIC2.03□□□□□ -2.08
PDX1P52945 SNORD115-8-201ENST00000363856 82 ntBASIC2.03□□□□□ -2.08
PDX1P52945 SNORD115-38-201ENST00000365037 82 ntBASIC2.03□□□□□ -2.08
PDX1P52945 MIR559-201ENST00000385188 96 ntBASIC2.03□□□□□ -2.08
PDX1P52945 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.03□□□□□ -2.08
PDX1P52945 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.03□□□□□ -2.08
PDX1P52945 AL035666.1-201ENST00000446195 348 ntBASIC2.03□□□□□ -2.08
PDX1P52945 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.03□□□□□ -2.08
PDX1P52945 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.03□□□□□ -2.08
PDX1P52945 MIR2053-201ENST00000459295 91 ntBASIC2.03□□□□□ -2.08
PDX1P52945 AC093259.1-201ENST00000509755 300 ntBASIC2.03□□□□□ -2.08
PDX1P52945 RNA5SP490-201ENST00000517141 136 ntBASIC2.03□□□□□ -2.08
PDX1P52945 RNU6-58P-201ENST00000517143 103 ntBASIC2.03□□□□□ -2.08
PDX1P52945 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.03□□□□□ -2.08
PDX1P52945 AC004584.2-201ENST00000570407 410 ntBASIC2.03□□□□□ -2.08
PDX1P52945 MIR1244-1-201ENST00000612829 85 ntBASIC2.03□□□□□ -2.08
PDX1P52945 MIR6845-201ENST00000613182 61 ntBASIC2.03□□□□□ -2.08
PDX1P52945 AC137590.2-201ENST00000619709 240 ntBASIC2.03□□□□□ -2.08
PDX1P52945 MIR1244-3-201ENST00000635744 85 ntBASIC2.03□□□□□ -2.08
PDX1P52945 MIR1244-2-201ENST00000636449 85 ntBASIC2.03□□□□□ -2.08
PDX1P52945 MIR1244-4-202ENST00000636813 85 ntBASIC2.03□□□□□ -2.08
PDX1P52945 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
PDX1P52945 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.03□□□□□ -2.08
PDX1P52945 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
PDX1P52945 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PDX1P52945 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
PDX1P52945 RNU6-873P-201ENST00000363833 107 ntBASIC2.02□□□□□ -2.09
PDX1P52945 RNU6-99P-201ENST00000364721 107 ntBASIC2.02□□□□□ -2.09
PDX1P52945 AL139156.1-201ENST00000412785 841 ntBASIC2.02□□□□□ -2.09
PDX1P52945 MRPS18CP6-201ENST00000423587 223 ntBASIC2.02□□□□□ -2.09
PDX1P52945 AC004386.2-201ENST00000441858 148 ntBASIC2.02□□□□□ -2.09
PDX1P52945 RPL17P19-201ENST00000489069 552 ntBASIC2.02□□□□□ -2.09
PDX1P52945 RNU7-175P-201ENST00000515915 61 ntBASIC2.02□□□□□ -2.09
PDX1P52945 RNA5SP458-201ENST00000516188 119 ntBASIC2.02□□□□□ -2.09
PDX1P52945 RNU5F-4P-201ENST00000516581 114 ntBASIC2.02□□□□□ -2.09
PDX1P52945 RNU6-307P-201ENST00000516743 106 ntBASIC2.02□□□□□ -2.09
PDX1P52945 Y_RNA.706-201ENST00000516933 99 ntBASIC2.02□□□□□ -2.09
PDX1P52945 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.02□□□□□ -2.09
PDX1P52945 MIR3126-201ENST00000577443 74 ntBASIC2.02□□□□□ -2.09
PDX1P52945 AL031274.2-201ENST00000599419 203 ntBASIC2.02□□□□□ -2.09
PDX1P52945 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.02□□□□□ -2.09
PDX1P52945 AC245884.12-201ENST00000615364 59 ntBASIC2.02□□□□□ -2.09
PDX1P52945 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PDX1P52945 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
PDX1P52945 BX322639.1-202ENST00000423987 2213 ntBASIC2.01□□□□□ -2.09
PDX1P52945 Y_RNA.106-201ENST00000363189 100 ntBASIC2.01□□□□□ -2.09
PDX1P52945 MIR10B-201ENST00000385011 110 ntBASIC2.01□□□□□ -2.09
PDX1P52945 SNORA48.3-201ENST00000391081 134 ntBASIC2.01□□□□□ -2.09
PDX1P52945 SNORA26.9-201ENST00000391322 122 ntBASIC2.01□□□□□ -2.09
PDX1P52945 AC022028.1-201ENST00000412054 408 ntBASIC2.01□□□□□ -2.09
PDX1P52945 MTCO2P27-201ENST00000420740 428 ntBASIC2.01□□□□□ -2.09
PDX1P52945 AC092423.1-201ENST00000430165 186 ntBASIC2.01□□□□□ -2.09
PDX1P52945 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.01□□□□□ -2.09
PDX1P52945 AC007677.1-201ENST00000445757 515 ntBASIC2.01□□□□□ -2.09
PDX1P52945 HMGN2P18-201ENST00000450680 270 ntBASIC2.01□□□□□ -2.09
PDX1P52945 AC011753.1-201ENST00000451001 220 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms