Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Y_RNA.100-201ENST00000363141 102 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 RNU4-32P-201ENST00000363404 141 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 RNU6-701P-201ENST00000384059 107 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 MIR544A-201ENST00000384855 91 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 Y_RNA.623-201ENST00000411128 95 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 AC007283.2-201ENST00000424739 197 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 TPTE2P1-204ENST00000435256 593 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC-0.61□□□□□ -2.51
CUX1P39880 MRPL42P4-201ENST00000453267 443 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 TPT1P7-201ENST00000458300 517 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 SNORA43.2-201ENST00000516652 128 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 RNU1-142P-201ENST00000516682 145 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC-0.61□□□□□ -2.51
CUX1P39880 AC027288.2-201ENST00000553028 243 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC-0.61□□□□□ -2.51
CUX1P39880 RMST_10.1-201ENST00000616309 154 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 AC132825.7-201ENST00000638744 335 ntBASIC-0.61□□□□□ -2.51
CUX1P39880 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 RNU6-417P-201ENST00000384712 107 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 MIR1185-1-201ENST00000408598 86 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC-0.62□□□□□ -2.51
CUX1P39880 AC007969.2-201ENST00000441891 191 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 RNU7-165P-201ENST00000458864 60 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 RNU6-848P-201ENST00000515948 107 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 RNU6-617P-201ENST00000516147 107 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 RNU6-473P-201ENST00000516164 107 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 RNU6-1315P-201ENST00000517187 99 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 AK6P2-201ENST00000549020 471 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 AL157871.3-201ENST00000557231 293 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 AL133153.1-201ENST00000557756 303 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 AL591926.4-201ENST00000616895 298 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 uc_338.16-201ENST00000621804 95 ntBASIC-0.62□□□□□ -2.51
CUX1P39880 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.62□□□□□ -2.51
CUX1P39880 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 AL079342.2-201ENST00000403367 482 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 MTCYBP2-201ENST00000407745 171 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 RNU4-46P-201ENST00000410818 138 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 NDUFB1P2-201ENST00000449477 176 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 AC006026.2-201ENST00000457376 180 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 RNU7-59P-201ENST00000459101 61 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 RNU6-953P-201ENST00000459154 107 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 XACT-201ENST00000468762 497 ntTSL 5 BASIC-0.63□□□□□ -2.51
CUX1P39880 AC109445.1-201ENST00000512356 383 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 AC026782.1-201ENST00000512952 449 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 RNU6-948P-201ENST00000516374 107 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC-0.63□□□□□ -2.51
CUX1P39880 AP000484.1-201ENST00000620067 1252 ntBASIC-0.63□□□□□ -2.51
CUX1P39880 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC-0.63□□□□□ -2.51
CUX1P39880 Y_RNA.33-201ENST00000362591 102 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 SNORA33-201ENST00000363664 130 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 RNU6-1284P-201ENST00000363701 100 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 Y_RNA.534-201ENST00000384599 112 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 RNU6-57P-201ENST00000411348 103 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AL353997.1-201ENST00000432936 108 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC-0.64□□□□□ -2.51
CUX1P39880 ZNF886P-201ENST00000450781 723 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC-0.64□□□□□ -2.51
CUX1P39880 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.64□□□□□ -2.51
CUX1P39880 RNU4-49P-201ENST00000516080 140 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AC013828.2-201ENST00000532487 235 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 MIR4666A-201ENST00000580160 79 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AC022217.4-201ENST00000604389 163 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 snoU2-30.2-201ENST00000362805 70 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 PCNPP3-201ENST00000393579 471 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.64□□□□□ -2.51
CUX1P39880 RPL17P35-201ENST00000432217 549 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 MTCYBP39-201ENST00000437562 491 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 GXYLT1P1-201ENST00000446657 490 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 OR8K2P-201ENST00000524645 927 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AP001328.1-201ENST00000528550 176 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AC004584.2-201ENST00000570407 410 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC-0.64□□□□□ -2.51
CUX1P39880 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-0.64□□□□□ -2.51
CUX1P39880 AC005332.6-201ENST00000613178 446 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 AL359075.3-201ENST00000613288 217 ntBASIC-0.64□□□□□ -2.51
CUX1P39880 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC-0.64□□□□□ -2.51
CUX1P39880 RNU6-343P-201ENST00000364709 104 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 RNU6-278P-201ENST00000390945 109 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 RNU6-269P-201ENST00000391077 97 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 RNA5SP300-201ENST00000391197 107 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 TIMM9P3-201ENST00000428659 274 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC-0.65□□□□□ -2.51
CUX1P39880 AC007000.2-201ENST00000442564 487 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 MTND1P17-201ENST00000448961 204 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 RPS29P15-201ENST00000458329 171 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC-0.65□□□□□ -2.51
CUX1P39880 BCRP9-201ENST00000605312 388 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 AP002360.4-201ENST00000606980 481 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 PART1_2.1-201ENST00000612397 250 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 AL354696.1-201ENST00000614652 497 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 AL450472.1-202ENST00000637286 180 ntBASIC-0.65□□□□□ -2.51
CUX1P39880 SNORD56.4-201ENST00000363883 71 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 SNORD114-3-201ENST00000364969 75 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 SMIM11P1-201ENST00000369586 178 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 RNU6-1026P-201ENST00000384465 108 ntBASIC-0.66□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms