Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXD13P35453 AC097473.1-201ENST00000508142 408 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 AC110588.1-201ENST00000559699 137 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXD13P35453 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXD13P35453 MIR3935-201ENST00000583472 104 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 AC008749.1-201ENST00000597650 306 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXD13P35453 AL359851.1-201ENST00000569460 4997 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
HOXD13P35453 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
HOXD13P35453 MIR340-201ENST00000362125 95 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 RNU6-280P-201ENST00000364145 104 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 RNU6-1305P-201ENST00000364353 104 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 RNU6-418P-201ENST00000384035 107 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
HOXD13P35453 SUMO2P12-201ENST00000405924 140 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 SNORA11.2-201ENST00000408318 127 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 RPL30P16-201ENST00000419341 429 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 Z82188.1-201ENST00000436709 154 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXD13P35453 ATP5J2P3-201ENST00000451550 258 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXD13P35453 RPL23AP42-201ENST00000471152 471 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 RNU6-1016P-201ENST00000516689 94 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 RNU6-58P-201ENST00000517143 103 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 AC134698.4-201ENST00000523451 826 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXD13P35453 MIR4713-201ENST00000582691 75 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 CASC19-280ENST00000642102 1351 ntBASIC2.05□□□□□ -2.08
HOXD13P35453 RNU1-62P-201ENST00000362599 164 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 Y_RNA.533-201ENST00000384596 114 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 MIR9-3-201ENST00000385084 90 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 MIR549A-201ENST00000385268 96 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 MIR548K-201ENST00000408406 116 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 RNA5SP489-201ENST00000410986 109 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 AC243428.1-201ENST00000421099 264 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.04□□□□□ -2.08
HOXD13P35453 AC112492.4-201ENST00000456549 352 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 SNORA25.14-201ENST00000516481 132 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 RNA5SP364-201ENST00000516938 78 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXD13P35453 AC104581.2-201ENST00000572227 430 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXD13P35453 AC116312.1-201ENST00000606841 314 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXD13P35453 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXD13P35453 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXD13P35453 DUXAP9-208ENST00000622815 614 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 AL078596.1-201ENST00000624856 447 ntBASIC2.04□□□□□ -2.08
HOXD13P35453 RNU6-595P-201ENST00000363944 107 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 RNU6-17P-201ENST00000384245 107 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 RNU6-975P-201ENST00000384296 105 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 RNU6-18P-201ENST00000384527 107 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 RNU6-1235P-201ENST00000384559 107 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 U8.13-201ENST00000390842 128 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 MIR548F5-201ENST00000408421 86 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 RNU2-40P-201ENST00000410833 196 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.03□□□□□ -2.08
HOXD13P35453 RPL37P10-201ENST00000412884 288 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 AC009310.1-201ENST00000414414 451 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 MTND1P2-201ENST00000430604 821 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.03□□□□□ -2.08
HOXD13P35453 RPS3AP52-201ENST00000435639 297 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 RNU6-498P-201ENST00000459468 107 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 RNVU1-2-201ENST00000516326 135 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 RNU6-856P-201ENST00000516959 98 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXD13P35453 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXD13P35453 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.03□□□□□ -2.08
HOXD13P35453 AC018462.2-201ENST00000605375 395 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 SNORD11B-201ENST00000607707 90 ntBASIC2.03□□□□□ -2.08
HOXD13P35453 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.09
HOXD13P35453 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HOXD13P35453 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
HOXD13P35453 Y_RNA.160-201ENST00000363677 92 ntBASIC2.02□□□□□ -2.09
HOXD13P35453 RNU6-876P-201ENST00000391295 104 ntBASIC2.02□□□□□ -2.09
HOXD13P35453 EBAG9P1-201ENST00000418955 543 ntBASIC2.02□□□□□ -2.09
HOXD13P35453 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD13P35453 RPL30P10-201ENST00000488148 337 ntBASIC2.02□□□□□ -2.09
HOXD13P35453 Y_RNA.706-201ENST00000516933 99 ntBASIC2.02□□□□□ -2.09
HOXD13P35453 Y_RNA.708-201ENST00000516950 96 ntBASIC2.02□□□□□ -2.09
HOXD13P35453 AC100812.1-201ENST00000607622 580 ntBASIC2.02□□□□□ -2.09
HOXD13P35453 Y_RNA.2-201ENST00000362330 96 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 Y_RNA.482-201ENST00000384377 111 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 MIR487A-201ENST00000385009 80 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 RNU6-159P-201ENST00000391080 106 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 AC004866.1-201ENST00000411748 78 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 OOSP1P1-201ENST00000423265 274 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 snoU13.15-201ENST00000459407 104 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 RNU7-57P-201ENST00000459540 60 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 HMGN2P9-201ENST00000476875 229 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 RNU6-1146P-201ENST00000516282 102 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 RNU7-30P-201ENST00000516835 62 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 SNORA44.1-201ENST00000517031 108 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 AP003033.1-201ENST00000527244 415 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 MIR5094-201ENST00000578766 85 ntBASIC2.01□□□□□ -2.09
HOXD13P35453 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms