Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.35□□□□□ -2.03
SHMT1P34896 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.35□□□□□ -2.03
SHMT1P34896 AL359314.1-201ENST00000616913 261 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.35□□□□□ -2.03
SHMT1P34896 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.34□□□□□ -2.03
SHMT1P34896 RNU6-99P-201ENST00000364721 107 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 RNU6-26P-201ENST00000383985 107 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 RNU1-52P-201ENST00000384190 164 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 SNORA12-201ENST00000391162 147 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 MIR190B-201ENST00000401119 79 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 MIR320B2-201ENST00000408479 138 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 RNU2-32P-201ENST00000411193 191 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 CYCSP49-201ENST00000420810 319 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.34□□□□□ -2.03
SHMT1P34896 HMGB3P3-201ENST00000510526 400 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.34□□□□□ -2.03
SHMT1P34896 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.34□□□□□ -2.03
SHMT1P34896 AC022616.8-201ENST00000533569 253 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 PRELID2P1-201ENST00000552837 301 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 AL355802.3-201ENST00000607571 545 ntBASIC2.34□□□□□ -2.03
SHMT1P34896 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.34□□□□□ -2.03
SHMT1P34896 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.04
SHMT1P34896 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
SHMT1P34896 RNU1-23P-201ENST00000363361 144 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 Y_RNA.197-201ENST00000364004 102 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 Y_RNA.319-201ENST00000365138 92 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 MIR625-201ENST00000385047 85 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 MIR559-201ENST00000385188 96 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
SHMT1P34896 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 RNU6-1156P-201ENST00000410365 100 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.33□□□□□ -2.04
SHMT1P34896 AC092423.1-201ENST00000430165 186 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 AC099799.1-201ENST00000439809 192 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 AC007677.1-201ENST00000445757 515 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 TOMM22P6-201ENST00000465035 409 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.33□□□□□ -2.04
SHMT1P34896 RNU6-120P-201ENST00000516077 103 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 RNU6-976P-201ENST00000516086 111 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 RNU6-58P-201ENST00000517143 103 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 AC110588.1-201ENST00000559699 137 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 AC026470.2-201ENST00000561492 181 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 AC090517.1-201ENST00000569307 266 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 SNRPGP20-201ENST00000604477 205 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 AC090971.5-201ENST00000621102 293 ntBASIC2.33□□□□□ -2.04
SHMT1P34896 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
SHMT1P34896 BX322639.1-202ENST00000423987 2213 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 MIRLET7G-201ENST00000362280 84 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 RNA5SP99-201ENST00000364020 114 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 SNORA26.9-201ENST00000391322 122 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.32□□□□□ -2.04
SHMT1P34896 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.32□□□□□ -2.04
SHMT1P34896 AC009238.1-201ENST00000442165 424 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 AL035666.1-201ENST00000446195 348 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 AC009237.6-201ENST00000446969 424 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 MIR2053-201ENST00000459295 91 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 RPL23AP42-201ENST00000471152 471 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.32□□□□□ -2.04
SHMT1P34896 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 RNU7-4P-201ENST00000516961 62 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.32□□□□□ -2.04
SHMT1P34896 MIR4658-201ENST00000584344 65 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.32□□□□□ -2.04
SHMT1P34896 AL080274.1-201ENST00000605565 220 ntBASIC2.32□□□□□ -2.04
SHMT1P34896 Y_RNA.106-201ENST00000363189 100 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 Y_RNA.364-201ENST00000365532 101 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 Y_RNA.463-201ENST00000384271 102 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.31□□□□□ -2.04
SHMT1P34896 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.31□□□□□ -2.04
SHMT1P34896 RNU6-699P-201ENST00000517081 110 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.31□□□□□ -2.04
SHMT1P34896 AC027288.2-201ENST00000553028 243 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.31□□□□□ -2.04
SHMT1P34896 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.31□□□□□ -2.04
SHMT1P34896 AC016727.2-201ENST00000603988 621 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 MIR6840-201ENST00000611937 71 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 AC005562.2-201ENST00000618264 111 ntBASIC2.31□□□□□ -2.04
SHMT1P34896 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.31□□□□□ -2.04
SHMT1P34896 RNU6-1115P-201ENST00000362490 106 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 RNU5F-3P-201ENST00000363767 117 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 RNU6-280P-201ENST00000364145 104 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 RNA5SP160-201ENST00000364866 120 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 SNORA25B-201ENST00000365507 128 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 RNU6-245P-201ENST00000384020 107 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 SNORA6-201ENST00000384033 151 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 Y_RNA.428-201ENST00000384078 102 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 RNU6-159P-201ENST00000391080 106 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 AL078595.1-201ENST00000404458 226 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.3□□□□□ -2.04
SHMT1P34896 Y_RNA.639-201ENST00000458981 102 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 AC079804.2-201ENST00000490376 200 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 SNORD116.3-201ENST00000517176 78 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 AC144568.1-201ENST00000520139 137 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.3□□□□□ -2.04
SHMT1P34896 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.3□□□□□ -2.04
SHMT1P34896 MIR1244-1-201ENST00000612829 85 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 TCL6_2.1-201ENST00000615162 119 ntBASIC2.3□□□□□ -2.04
SHMT1P34896 AC245884.12-201ENST00000615364 59 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms