Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 NFU1P2-201ENST00000448700 469 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 EPS15P1-201ENST00000448836 336 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 COX6CP6-201ENST00000490840 228 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 UBE2V1P12-201ENST00000503954 474 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.44□□□□□ -2.34
HLA-DMBP28068 Z99497.2-201ENST00000603634 310 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 AL133173.2-201ENST00000614270 90 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 MIR7844-201ENST00000616161 122 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 uc_338.17-201ENST00000619633 179 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 MIR8054-201ENST00000620877 86 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 AC006001.4-201ENST00000622243 395 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 AP002371.2-201ENST00000624450 503 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
HLA-DMBP28068 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
HLA-DMBP28068 RNU6-266P-201ENST00000364225 107 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 RNU6-110P-201ENST00000384508 104 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 MIR586-201ENST00000385035 97 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 SNORD70.1-201ENST00000391007 85 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 RNA5SP323-201ENST00000391094 133 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.43□□□□□ -2.34
HLA-DMBP28068 CDK8P2-201ENST00000415020 547 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AC016909.1-201ENST00000415916 166 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.43□□□□□ -2.34
HLA-DMBP28068 AC004386.2-201ENST00000441858 148 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AC009237.7-201ENST00000447357 229 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.43□□□□□ -2.34
HLA-DMBP28068 RNU7-182P-201ENST00000459009 62 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.43□□□□□ -2.34
HLA-DMBP28068 APOOP3-201ENST00000536787 586 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC0.43□□□□□ -2.34
HLA-DMBP28068 RSL24D1P11-201ENST00000591045 491 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AC146944.4-201ENST00000602697 718 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AC104465.1-201ENST00000611365 139 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 uc_338.11-201ENST00000619132 160 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AL603839.4-201ENST00000624658 1005 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 SEPT14P19-203ENST00000633205 211 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AC007671.2-201ENST00000637344 619 ntBASIC0.43□□□□□ -2.34
HLA-DMBP28068 AL442644.1-201ENST00000454390 3105 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 RNU6-1029P-201ENST00000384109 107 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 RNU6-1127P-201ENST00000384580 107 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 MIR216A-201ENST00000385063 110 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 MIR660-201ENST00000385235 97 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 MIR942-201ENST00000401111 86 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.42□□□□□ -2.34
HLA-DMBP28068 MTND3P17-201ENST00000416968 344 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 GPR143P-201ENST00000434155 205 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.42□□□□□ -2.34
HLA-DMBP28068 MTND4LP16-201ENST00000440828 295 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 AL157398.1-201ENST00000452981 186 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 snoU13.6-201ENST00000458785 104 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 HMGB1P29-201ENST00000505659 499 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 RNU1-142P-201ENST00000516682 145 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 AGGF1P4-201ENST00000568249 801 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 MIR3941-201ENST00000582572 103 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 MIR5006-201ENST00000583027 110 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 AC068790.6-201ENST00000602558 258 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 AL353765.1-201ENST00000605514 183 ntBASIC0.42□□□□□ -2.34
HLA-DMBP28068 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
HLA-DMBP28068 MTND4P9-201ENST00000507819 1346 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 RNU4-76P-201ENST00000364509 141 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 RNU6-108P-201ENST00000365558 107 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 Y_RNA.399-201ENST00000383955 105 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 MIR513B-201ENST00000385136 84 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 RNU6-440P-201ENST00000390882 105 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 MIR1253-201ENST00000408273 105 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 AC004866.1-201ENST00000411748 78 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 AC074290.1-201ENST00000448883 135 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.41□□□□□ -2.34
HLA-DMBP28068 RNU7-21P-201ENST00000459430 62 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 AC098869.1-201ENST00000481627 292 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 AC069113.1-201ENST00000517763 267 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.41□□□□□ -2.34
HLA-DMBP28068 AC004584.2-201ENST00000570407 410 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.41□□□□□ -2.34
HLA-DMBP28068 AC080078.2-201ENST00000603766 501 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 AP001596.2-201ENST00000608410 312 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 AL359075.3-201ENST00000613288 217 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 AC073349.3-201ENST00000617616 186 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 AC106754.2-201ENST00000623006 233 ntBASIC0.41□□□□□ -2.34
HLA-DMBP28068 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.41□□□□□ -2.34
HLA-DMBP28068 Y_RNA.36-201ENST00000362602 112 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 RNU5B-2P-201ENST00000363036 113 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 RNU6-1097P-201ENST00000363586 107 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 RNA5SP499-201ENST00000363982 119 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 Y_RNA.466-201ENST00000384294 113 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 SNORA67.2-201ENST00000384300 149 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 MIR936-201ENST00000401264 98 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 MRPL42P3-201ENST00000401492 326 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 AL034345.1-201ENST00000407768 123 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 Y_RNA.598-201ENST00000410480 95 ntBASIC0.4□□□□□ -2.35
HLA-DMBP28068 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.4□□□□□ -2.35
HLA-DMBP28068 MTCO2P3-201ENST00000442543 421 ntBASIC0.4□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms