Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-1279P-201ENST00000383917 103 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 U8.11-201ENST00000384699 133 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 RNA5SP511-201ENST00000410487 115 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 RPS29P4-201ENST00000414733 161 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 AC245291.1-201ENST00000419501 328 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 EIF4EP4-201ENST00000424916 578 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 U8.18-201ENST00000459285 133 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 RPL23AP67-201ENST00000465341 474 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 RPS26P48-201ENST00000491713 339 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 RNY4P20-201ENST00000516678 93 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 RNU6-63P-201ENST00000516690 95 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.65□□□□□ -1.83
COL8A1P27658 AC022254.1-201ENST00000567857 235 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 MIR4458-201ENST00000578872 75 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 MIR3922-201ENST00000585192 84 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 RPL17P51-201ENST00000605218 238 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.65□□□□□ -1.83
COL8A1P27658 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
COL8A1P27658 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL8A1P27658 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL8A1P27658 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL8A1P27658 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.64□□□□□ -1.83
COL8A1P27658 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL8A1P27658 RNU1-20P-201ENST00000363314 162 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 Y_RNA.796-201ENST00000364268 102 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 RNU6-776P-201ENST00000364403 104 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 Y_RNA.799-201ENST00000364992 102 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 RNU6-1022P-201ENST00000365049 104 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 Y_RNA.313-201ENST00000365095 103 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 TOMM22P1-201ENST00000418578 312 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 NDUFB4P6-201ENST00000436819 366 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 AC245102.2-201ENST00000448956 180 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 BX510359.1-201ENST00000456973 237 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 RN7SL293P-201ENST00000481765 281 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 AL592156.1-201ENST00000508758 304 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 RNA5SP20-201ENST00000515976 84 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 RNU6-240P-201ENST00000516098 97 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 RNU6-1018P-201ENST00000516577 106 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 RNA5SP73-201ENST00000516744 108 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 SCARNA15-202ENST00000516881 127 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 RN7SKP289-201ENST00000517244 295 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 AC107934.2-201ENST00000518653 310 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.64□□□□□ -1.83
COL8A1P27658 MIR5588-201ENST00000581890 63 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 AL162726.3-218ENST00000636401 95 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 MIR6715B-201ENST00000637172 77 ntBASIC3.64□□□□□ -1.83
COL8A1P27658 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
COL8A1P27658 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.64□□□□□ -1.83
COL8A1P27658 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL8A1P27658 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL8A1P27658 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.64□□□□□ -1.83
COL8A1P27658 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.64□□□□□ -1.83
COL8A1P27658 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL8A1P27658 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL8A1P27658 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL8A1P27658 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL8A1P27658 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.63□□□□□ -1.83
COL8A1P27658 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.63□□□□□ -1.83
COL8A1P27658 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL8A1P27658 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.63□□□□□ -1.83
COL8A1P27658 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
COL8A1P27658 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.63□□□□□ -1.83
COL8A1P27658 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL8A1P27658 Y_RNA.40-201ENST00000362645 93 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 RNU6-529P-201ENST00000363383 104 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 RNU6-1209P-201ENST00000363655 107 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 MIR548D2-201ENST00000384955 97 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 MIR921-201ENST00000401133 56 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 AL139095.1-201ENST00000404326 391 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 AL031121.1-201ENST00000406553 254 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 RPL23AP48-201ENST00000406913 488 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.63□□□□□ -1.83
COL8A1P27658 AC063976.3-201ENST00000426849 329 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 RPS3P1-201ENST00000456781 192 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 SNORD65B-201ENST00000459126 73 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 RNU7-171P-201ENST00000459581 62 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 HMGN2P9-201ENST00000476875 229 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 RN7SL323P-201ENST00000494712 295 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.63□□□□□ -1.83
COL8A1P27658 AC022655.2-201ENST00000577280 318 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.63□□□□□ -1.83
COL8A1P27658 MIR6852-201ENST00000621699 66 ntBASIC3.63□□□□□ -1.83
COL8A1P27658 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL8A1P27658 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL8A1P27658 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL8A1P27658 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL8A1P27658 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL8A1P27658 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
COL8A1P27658 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
COL8A1P27658 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL8A1P27658 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL8A1P27658 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
COL8A1P27658 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL8A1P27658 RNU6-1010P-201ENST00000362757 107 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 SNORA51.4-201ENST00000364993 124 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 MIR181A2-201ENST00000384863 110 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 MT-TI-201ENST00000387365 69 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 AL451046.2-201ENST00000403074 277 ntBASIC3.62□□□□□ -1.83
COL8A1P27658 Y_RNA.601-201ENST00000410500 113 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms