Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MCFD2P1-201ENST00000417812 300 ntBASIC2.15□□□□□ -2.07
MSH3P20585 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.15□□□□□ -2.07
MSH3P20585 AL590556.1-201ENST00000423231 483 ntBASIC2.15□□□□□ -2.07
MSH3P20585 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
MSH3P20585 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.15□□□□□ -2.07
MSH3P20585 AL163540.1-201ENST00000485382 386 ntBASIC2.15□□□□□ -2.07
MSH3P20585 ANXA2P1-201ENST00000505539 926 ntBASIC2.15□□□□□ -2.07
MSH3P20585 SCARNA16.3-201ENST00000516595 184 ntBASIC2.15□□□□□ -2.07
MSH3P20585 RNU6-1198P-201ENST00000516904 67 ntBASIC2.15□□□□□ -2.07
MSH3P20585 RN7SKP295-201ENST00000517264 153 ntBASIC2.15□□□□□ -2.07
MSH3P20585 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.15□□□□□ -2.07
MSH3P20585 MIR1273D-201ENST00000577266 86 ntBASIC2.15□□□□□ -2.07
MSH3P20585 AC092447.9-201ENST00000603395 144 ntBASIC2.15□□□□□ -2.07
MSH3P20585 AL138963.2-201ENST00000605137 226 ntBASIC2.15□□□□□ -2.07
MSH3P20585 AC007485.1-201ENST00000616755 206 ntBASIC2.15□□□□□ -2.07
MSH3P20585 AL596028.1-201ENST00000326971 197 ntBASIC2.14□□□□□ -2.07
MSH3P20585 RNU6-944P-201ENST00000364023 107 ntBASIC2.14□□□□□ -2.07
MSH3P20585 RNU4-42P-201ENST00000364738 142 ntBASIC2.14□□□□□ -2.07
MSH3P20585 Y_RNA.319-201ENST00000365138 92 ntBASIC2.14□□□□□ -2.07
MSH3P20585 Y_RNA.358-201ENST00000365491 99 ntBASIC2.14□□□□□ -2.07
MSH3P20585 SNORA22B-201ENST00000383876 138 ntBASIC2.14□□□□□ -2.07
MSH3P20585 Y_RNA.557-201ENST00000384680 107 ntBASIC2.14□□□□□ -2.07
MSH3P20585 RNA5SP213-201ENST00000391031 106 ntBASIC2.14□□□□□ -2.07
MSH3P20585 RNU6-159P-201ENST00000391080 106 ntBASIC2.14□□□□□ -2.07
MSH3P20585 AL355497.1-201ENST00000406262 551 ntBASIC2.14□□□□□ -2.07
MSH3P20585 Y_RNA.597-201ENST00000410463 100 ntBASIC2.14□□□□□ -2.07
MSH3P20585 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
MSH3P20585 AL161788.1-201ENST00000441805 169 ntBASIC2.14□□□□□ -2.07
MSH3P20585 CHEK2P4-201ENST00000450340 246 ntBASIC2.14□□□□□ -2.07
MSH3P20585 CYP2C59P-201ENST00000457790 269 ntBASIC2.14□□□□□ -2.07
MSH3P20585 TRBV12-1-201ENST00000479785 344 ntBASIC2.14□□□□□ -2.07
MSH3P20585 AC079804.2-201ENST00000490376 200 ntBASIC2.14□□□□□ -2.07
MSH3P20585 RNU4-77P-201ENST00000516692 156 ntBASIC2.14□□□□□ -2.07
MSH3P20585 AC144568.1-201ENST00000520139 137 ntBASIC2.14□□□□□ -2.07
MSH3P20585 AL442663.2-201ENST00000554385 511 ntBASIC2.14□□□□□ -2.07
MSH3P20585 AC090617.3-201ENST00000573670 475 ntBASIC2.14□□□□□ -2.07
MSH3P20585 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.14□□□□□ -2.07
MSH3P20585 AC016727.2-201ENST00000603988 621 ntBASIC2.14□□□□□ -2.07
MSH3P20585 SNORD14A-201ENST00000606526 91 ntBASIC2.14□□□□□ -2.07
MSH3P20585 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.14□□□□□ -2.07
MSH3P20585 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
MSH3P20585 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.13□□□□□ -2.07
MSH3P20585 RNU6-222P-201ENST00000362438 107 ntBASIC2.13□□□□□ -2.07
MSH3P20585 Y_RNA.148-201ENST00000363557 117 ntBASIC2.13□□□□□ -2.07
MSH3P20585 Y_RNA.202-201ENST00000364083 110 ntBASIC2.13□□□□□ -2.07
MSH3P20585 RNY3P11-201ENST00000364153 102 ntBASIC2.13□□□□□ -2.07
MSH3P20585 RNA5SP126-201ENST00000365092 109 ntBASIC2.13□□□□□ -2.07
MSH3P20585 Y_RNA.326-201ENST00000365176 113 ntBASIC2.13□□□□□ -2.07
MSH3P20585 RNU6-301P-201ENST00000384277 107 ntBASIC2.13□□□□□ -2.07
MSH3P20585 SNORA69.1-201ENST00000390904 137 ntBASIC2.13□□□□□ -2.07
MSH3P20585 SNORA12-201ENST00000391162 147 ntBASIC2.13□□□□□ -2.07
MSH3P20585 RNU1-139P-201ENST00000391307 165 ntBASIC2.13□□□□□ -2.07
MSH3P20585 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.13□□□□□ -2.07
MSH3P20585 Y_RNA.592-201ENST00000410274 109 ntBASIC2.13□□□□□ -2.07
MSH3P20585 DPH3P2-201ENST00000422618 250 ntBASIC2.13□□□□□ -2.07
MSH3P20585 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.13□□□□□ -2.07
MSH3P20585 AP000870.1-201ENST00000472927 406 ntBASIC2.13□□□□□ -2.07
MSH3P20585 AC090255.1-201ENST00000495779 349 ntBASIC2.13□□□□□ -2.07
MSH3P20585 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.13□□□□□ -2.07
MSH3P20585 RNA5SP54-201ENST00000516951 92 ntBASIC2.13□□□□□ -2.07
MSH3P20585 RNU6-988P-201ENST00000519081 107 ntBASIC2.13□□□□□ -2.07
MSH3P20585 ANP32BP3-201ENST00000559213 706 ntBASIC2.13□□□□□ -2.07
MSH3P20585 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.13□□□□□ -2.07
MSH3P20585 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.13□□□□□ -2.07
MSH3P20585 AL353621.2-201ENST00000605340 133 ntBASIC2.13□□□□□ -2.07
MSH3P20585 AC006157.1-201ENST00000611750 366 ntBASIC2.13□□□□□ -2.07
MSH3P20585 AC083806.3-201ENST00000614016 455 ntBASIC2.13□□□□□ -2.07
MSH3P20585 AC008121.3-201ENST00000618726 433 ntBASIC2.13□□□□□ -2.07
MSH3P20585 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.13□□□□□ -2.07
MSH3P20585 MIR4272-201ENST00000635924 64 ntBASIC2.13□□□□□ -2.07
MSH3P20585 MTND5P16-201ENST00000460269 1703 ntBASIC2.13□□□□□ -2.07
MSH3P20585 BX322639.1-202ENST00000423987 2213 ntBASIC2.13□□□□□ -2.07
MSH3P20585 Y_RNA.39-201ENST00000362620 98 ntBASIC2.12□□□□□ -2.07
MSH3P20585 RNU6-541P-201ENST00000384709 110 ntBASIC2.12□□□□□ -2.07
MSH3P20585 MIR10B-201ENST00000385011 110 ntBASIC2.12□□□□□ -2.07
MSH3P20585 MIR549A-201ENST00000385268 96 ntBASIC2.12□□□□□ -2.07
MSH3P20585 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
MSH3P20585 Y_RNA.605-201ENST00000410577 105 ntBASIC2.12□□□□□ -2.07
MSH3P20585 RN7SKP223-201ENST00000410582 62 ntBASIC2.12□□□□□ -2.07
MSH3P20585 RNU2-63P-201ENST00000410792 194 ntBASIC2.12□□□□□ -2.07
MSH3P20585 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.12□□□□□ -2.07
MSH3P20585 CBX3P6-201ENST00000430257 527 ntBASIC2.12□□□□□ -2.07
MSH3P20585 USP9YP16-201ENST00000430287 407 ntBASIC2.12□□□□□ -2.07
MSH3P20585 AC096638.1-201ENST00000444678 216 ntBASIC2.12□□□□□ -2.07
MSH3P20585 USP9YP23-201ENST00000455085 407 ntBASIC2.12□□□□□ -2.07
MSH3P20585 U8.22-201ENST00000459141 133 ntBASIC2.12□□□□□ -2.07
MSH3P20585 RNU7-87P-201ENST00000459343 62 ntBASIC2.12□□□□□ -2.07
MSH3P20585 SNORA25.10-201ENST00000515926 124 ntBASIC2.12□□□□□ -2.07
MSH3P20585 RNU6-1114P-201ENST00000516022 107 ntBASIC2.12□□□□□ -2.07
MSH3P20585 HSPE1P18-201ENST00000517602 280 ntBASIC2.12□□□□□ -2.07
MSH3P20585 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
MSH3P20585 AC023442.1-201ENST00000531247 422 ntBASIC2.12□□□□□ -2.07
MSH3P20585 AP003072.1-201ENST00000531740 145 ntBASIC2.12□□□□□ -2.07
MSH3P20585 AC018630.3-201ENST00000542637 96 ntBASIC2.12□□□□□ -2.07
MSH3P20585 SNORD58B-201ENST00000607313 66 ntBASIC2.12□□□□□ -2.07
MSH3P20585 AC007742.2-201ENST00000618226 398 ntBASIC2.12□□□□□ -2.07
MSH3P20585 AC012640.5-201ENST00000623897 319 ntBASIC2.12□□□□□ -2.07
MSH3P20585 AL606534.2-204ENST00000635008 178 ntBASIC2.12□□□□□ -2.07
MSH3P20585 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.12□□□□□ -2.07
MSH3P20585 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms