Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR5696-201ENST00000578474 85 ntBASIC1.55□□□□□ -2.16
SDC1P18827 AL158827.2-201ENST00000602494 330 ntBASIC1.55□□□□□ -2.16
SDC1P18827 AL691447.3-201ENST00000635020 330 ntBASIC1.55□□□□□ -2.16
SDC1P18827 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.55□□□□□ -2.16
SDC1P18827 BX322639.1-202ENST00000423987 2213 ntBASIC1.55□□□□□ -2.16
SDC1P18827 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.55□□□□□ -2.16
SDC1P18827 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
SDC1P18827 Y_RNA.132-201ENST00000363421 102 ntBASIC1.54□□□□□ -2.16
SDC1P18827 SNORD115-32-201ENST00000364079 82 ntBASIC1.54□□□□□ -2.16
SDC1P18827 Y_RNA.533-201ENST00000384596 114 ntBASIC1.54□□□□□ -2.16
SDC1P18827 MIR300-201ENST00000401138 83 ntBASIC1.54□□□□□ -2.16
SDC1P18827 AL356776.1-201ENST00000406574 447 ntBASIC1.54□□□□□ -2.16
SDC1P18827 RNA5SP100-201ENST00000410903 110 ntBASIC1.54□□□□□ -2.16
SDC1P18827 RNA5SP59-201ENST00000410922 110 ntBASIC1.54□□□□□ -2.16
SDC1P18827 AC009310.1-201ENST00000414414 451 ntBASIC1.54□□□□□ -2.16
SDC1P18827 AC243428.1-201ENST00000421099 264 ntBASIC1.54□□□□□ -2.16
SDC1P18827 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SDC1P18827 MTCO3P46-201ENST00000425787 232 ntBASIC1.54□□□□□ -2.16
SDC1P18827 USP9YP30-201ENST00000430729 455 ntBASIC1.54□□□□□ -2.16
SDC1P18827 HMGB1P18-201ENST00000438801 619 ntBASIC1.54□□□□□ -2.16
SDC1P18827 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.54□□□□□ -2.16
SDC1P18827 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.54□□□□□ -2.16
SDC1P18827 RPL30P10-201ENST00000488148 337 ntBASIC1.54□□□□□ -2.16
SDC1P18827 AC018710.1-201ENST00000506509 158 ntBASIC1.54□□□□□ -2.16
SDC1P18827 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SDC1P18827 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.54□□□□□ -2.16
SDC1P18827 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.54□□□□□ -2.16
SDC1P18827 RRN3P3-201ENST00000549207 578 ntBASIC1.54□□□□□ -2.16
SDC1P18827 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.54□□□□□ -2.16
SDC1P18827 MIR4255-201ENST00000579351 72 ntBASIC1.54□□□□□ -2.16
SDC1P18827 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.54□□□□□ -2.16
SDC1P18827 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.54□□□□□ -2.16
SDC1P18827 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.54□□□□□ -2.16
SDC1P18827 MIR6128-201ENST00000615528 109 ntBASIC1.54□□□□□ -2.16
SDC1P18827 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.54□□□□□ -2.16
SDC1P18827 MTND4P5-201ENST00000435821 1374 ntBASIC1.54□□□□□ -2.16
SDC1P18827 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
SDC1P18827 AL356292.1-201ENST00000283110 373 ntBASIC1.53□□□□□ -2.16
SDC1P18827 SNORD115-8-201ENST00000363856 82 ntBASIC1.53□□□□□ -2.16
SDC1P18827 SNORD115-38-201ENST00000365037 82 ntBASIC1.53□□□□□ -2.16
SDC1P18827 RNU6-596P-201ENST00000365395 98 ntBASIC1.53□□□□□ -2.16
SDC1P18827 RNU6-842P-201ENST00000384269 107 ntBASIC1.53□□□□□ -2.16
SDC1P18827 RNU6-510P-201ENST00000391239 108 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AL627390.1-201ENST00000396055 340 ntBASIC1.53□□□□□ -2.16
SDC1P18827 RNU6-174P-201ENST00000410406 106 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AL139396.1-201ENST00000421137 167 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AL357134.1-201ENST00000445848 426 ntBASIC1.53□□□□□ -2.16
SDC1P18827 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SDC1P18827 HMGN2P9-201ENST00000476875 229 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AC082651.2-201ENST00000496833 166 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.53□□□□□ -2.16
SDC1P18827 RNU6-856P-201ENST00000516959 98 ntBASIC1.53□□□□□ -2.16
SDC1P18827 RNU1-54P-201ENST00000517181 120 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.53□□□□□ -2.16
SDC1P18827 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.53□□□□□ -2.16
SDC1P18827 AC027288.2-201ENST00000553028 243 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.53□□□□□ -2.16
SDC1P18827 MIR4713-201ENST00000582691 75 ntBASIC1.53□□□□□ -2.16
SDC1P18827 MIR4753-201ENST00000585119 83 ntBASIC1.53□□□□□ -2.16
SDC1P18827 SNRPGP20-201ENST00000604477 205 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AC092794.1-201ENST00000612734 582 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AC083806.3-201ENST00000614016 455 ntBASIC1.53□□□□□ -2.16
SDC1P18827 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.53□□□□□ -2.16
SDC1P18827 AL159152.1-201ENST00000635019 2587 ntBASIC1.53□□□□□ -2.16
SDC1P18827 MIR548F5-201ENST00000408421 86 ntBASIC1.52□□□□□ -2.17
SDC1P18827 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.52□□□□□ -2.17
SDC1P18827 MTND3P8-201ENST00000412909 339 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.52□□□□□ -2.17
SDC1P18827 OOSP1P1-201ENST00000423265 274 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AL445305.1-201ENST00000432577 575 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC099677.2-201ENST00000436385 175 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC016717.1-201ENST00000448918 286 ntBASIC1.52□□□□□ -2.17
SDC1P18827 SNORD5.1-201ENST00000458800 75 ntBASIC1.52□□□□□ -2.17
SDC1P18827 snoU13.30-201ENST00000458951 104 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC010409.1-201ENST00000487382 476 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC116337.1-201ENST00000509680 687 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.52□□□□□ -2.17
SDC1P18827 AC067942.3-201ENST00000512025 362 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.52□□□□□ -2.17
SDC1P18827 SUMO2P18-201ENST00000518873 252 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.52□□□□□ -2.17
SDC1P18827 SUB1P4-201ENST00000566062 339 ntBASIC1.52□□□□□ -2.17
SDC1P18827 MIR5094-201ENST00000578766 85 ntBASIC1.52□□□□□ -2.17
SDC1P18827 U6atac.1-201ENST00000616025 117 ntBASIC1.52□□□□□ -2.17
SDC1P18827 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.52□□□□□ -2.17
SDC1P18827 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.52□□□□□ -2.17
SDC1P18827 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
SDC1P18827 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.52□□□□□ -2.17
SDC1P18827 AC245060.5-201ENST00000610778 3293 ntBASIC1.51□□□□□ -2.17
SDC1P18827 Y_RNA.248-201ENST00000364501 109 ntBASIC1.51□□□□□ -2.17
SDC1P18827 Y_RNA.319-201ENST00000365138 92 ntBASIC1.51□□□□□ -2.17
SDC1P18827 SNORA67.2-201ENST00000384300 149 ntBASIC1.51□□□□□ -2.17
SDC1P18827 Y_RNA.473-201ENST00000384333 102 ntBASIC1.51□□□□□ -2.17
SDC1P18827 MIR153-2-201ENST00000385225 87 ntBASIC1.51□□□□□ -2.17
SDC1P18827 MIR548K-201ENST00000408406 116 ntBASIC1.51□□□□□ -2.17
SDC1P18827 RNA5SP504-201ENST00000410676 117 ntBASIC1.51□□□□□ -2.17
SDC1P18827 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.51□□□□□ -2.17
SDC1P18827 ATP5J2P3-201ENST00000451550 258 ntBASIC1.51□□□□□ -2.17
SDC1P18827 RNA5SP54-201ENST00000516951 92 ntBASIC1.51□□□□□ -2.17
SDC1P18827 RNU6-58P-201ENST00000517143 103 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms