Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.63□□□□□ -2.15
SDC3O75056 MIR3942-201ENST00000585264 109 ntBASIC1.63□□□□□ -2.15
SDC3O75056 AC005786.1-201ENST00000588553 154 ntBASIC1.63□□□□□ -2.15
SDC3O75056 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.63□□□□□ -2.15
SDC3O75056 AC005562.2-201ENST00000618264 111 ntBASIC1.63□□□□□ -2.15
SDC3O75056 AC006504.8-201ENST00000621046 635 ntBASIC1.63□□□□□ -2.15
SDC3O75056 SCARNA4-201ENST00000629045 128 ntBASIC1.63□□□□□ -2.15
SDC3O75056 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.63□□□□□ -2.15
SDC3O75056 RNU6-1026P-201ENST00000384465 108 ntBASIC1.62□□□□□ -2.15
SDC3O75056 MIR517A-201ENST00000385001 87 ntBASIC1.62□□□□□ -2.15
SDC3O75056 MIR300-201ENST00000401138 83 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.62□□□□□ -2.15
SDC3O75056 AC087477.1-201ENST00000465747 340 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.62□□□□□ -2.15
SDC3O75056 SNORA44.1-201ENST00000517031 108 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.62□□□□□ -2.15
SDC3O75056 DNAJC19P9-201ENST00000555084 351 ntBASIC1.62□□□□□ -2.15
SDC3O75056 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.62□□□□□ -2.15
SDC3O75056 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.62□□□□□ -2.15
SDC3O75056 POLR3GP2-201ENST00000588366 668 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AC016727.2-201ENST00000603988 621 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AL645939.4-201ENST00000604495 135 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AL359821.1-201ENST00000605519 182 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.62□□□□□ -2.15
SDC3O75056 TCL6_2.1-201ENST00000615162 119 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AC002553.4-201ENST00000616896 331 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AC022513.1-201ENST00000624512 117 ntBASIC1.62□□□□□ -2.15
SDC3O75056 AL359697.1-201ENST00000624879 587 ntBASIC1.62□□□□□ -2.15
SDC3O75056 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.62□□□□□ -2.15
SDC3O75056 AC100810.6-201ENST00000638068 285 ntBASIC1.62□□□□□ -2.15
SDC3O75056 MTND5P9-201ENST00000503854 1755 ntBASIC1.62□□□□□ -2.15
SDC3O75056 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.61□□□□□ -2.15
SDC3O75056 RNU1-42P-201ENST00000364033 160 ntBASIC1.61□□□□□ -2.15
SDC3O75056 RNU6-1013P-201ENST00000384180 107 ntBASIC1.61□□□□□ -2.15
SDC3O75056 RNU6-831P-201ENST00000384548 107 ntBASIC1.61□□□□□ -2.15
SDC3O75056 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
SDC3O75056 RNA5SP100-201ENST00000410903 110 ntBASIC1.61□□□□□ -2.15
SDC3O75056 RNA5SP59-201ENST00000410922 110 ntBASIC1.61□□□□□ -2.15
SDC3O75056 EIF1P1-201ENST00000421436 341 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AC139712.2-201ENST00000424302 339 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AL357134.1-201ENST00000445848 426 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.61□□□□□ -2.15
SDC3O75056 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.61□□□□□ -2.15
SDC3O75056 RNU7-95P-201ENST00000459222 64 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AC008834.1-201ENST00000511612 175 ntBASIC1.61□□□□□ -2.15
SDC3O75056 TRMT112P2-201ENST00000512910 132 ntBASIC1.61□□□□□ -2.15
SDC3O75056 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.61□□□□□ -2.15
SDC3O75056 AC104581.2-201ENST00000572227 430 ntBASIC1.61□□□□□ -2.15
SDC3O75056 SNORD53B-201ENST00000577887 78 ntBASIC1.61□□□□□ -2.15
SDC3O75056 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.61□□□□□ -2.15
SDC3O75056 MIR3618-201ENST00000580330 88 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AC068790.6-201ENST00000602558 258 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AC010900.2-201ENST00000604508 210 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AC124303.1-201ENST00000605703 360 ntBASIC1.61□□□□□ -2.15
SDC3O75056 AL512598.1-201ENST00000610158 273 ntBASIC1.61□□□□□ -2.15
SDC3O75056 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.61□□□□□ -2.15
SDC3O75056 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.61□□□□□ -2.15
SDC3O75056 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.61□□□□□ -2.15
SDC3O75056 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.61□□□□□ -2.15
SDC3O75056 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SDC3O75056 BX322639.1-202ENST00000423987 2213 ntBASIC1.6□□□□□ -2.15
SDC3O75056 SNORD115-32-201ENST00000364079 82 ntBASIC1.6□□□□□ -2.15
SDC3O75056 RNU6-192P-201ENST00000391253 100 ntBASIC1.6□□□□□ -2.15
SDC3O75056 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SDC3O75056 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SDC3O75056 FCF1P9-201ENST00000412546 282 ntBASIC1.6□□□□□ -2.15
SDC3O75056 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.6□□□□□ -2.15
SDC3O75056 AC009237.7-201ENST00000447357 229 ntBASIC1.6□□□□□ -2.15
SDC3O75056 AC010531.2-201ENST00000465012 153 ntBASIC1.6□□□□□ -2.15
SDC3O75056 AC092989.1-201ENST00000481235 277 ntBASIC1.6□□□□□ -2.15
SDC3O75056 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.6□□□□□ -2.15
SDC3O75056 ACA59.1-201ENST00000515966 143 ntBASIC1.6□□□□□ -2.15
SDC3O75056 RNU6-718P-201ENST00000516166 105 ntBASIC1.6□□□□□ -2.15
SDC3O75056 SUB1P3-201ENST00000564581 315 ntBASIC1.6□□□□□ -2.15
SDC3O75056 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.6□□□□□ -2.15
SDC3O75056 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.6□□□□□ -2.15
SDC3O75056 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.6□□□□□ -2.15
SDC3O75056 AC019193.3-201ENST00000609144 554 ntBASIC1.6□□□□□ -2.15
SDC3O75056 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.6□□□□□ -2.15
SDC3O75056 MIR337-201ENST00000362281 93 ntBASIC1.59□□□□□ -2.15
SDC3O75056 SNORD115-8-201ENST00000363856 82 ntBASIC1.59□□□□□ -2.15
SDC3O75056 RNU4-9P-201ENST00000364951 139 ntBASIC1.59□□□□□ -2.15
SDC3O75056 SNORD115-38-201ENST00000365037 82 ntBASIC1.59□□□□□ -2.15
SDC3O75056 RNU6-596P-201ENST00000365395 98 ntBASIC1.59□□□□□ -2.15
SDC3O75056 MIR1287-201ENST00000408492 90 ntBASIC1.59□□□□□ -2.15
SDC3O75056 MTCO3P46-201ENST00000425787 232 ntBASIC1.59□□□□□ -2.15
SDC3O75056 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.59□□□□□ -2.15
SDC3O75056 MTND1P4-201ENST00000435196 415 ntBASIC1.59□□□□□ -2.15
SDC3O75056 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC3O75056 AC004386.2-201ENST00000441858 148 ntBASIC1.59□□□□□ -2.15
SDC3O75056 MTND1P17-201ENST00000448961 204 ntBASIC1.59□□□□□ -2.15
SDC3O75056 AC067942.3-201ENST00000512025 362 ntBASIC1.59□□□□□ -2.15
SDC3O75056 RNU2-34P-201ENST00000516534 121 ntBASIC1.59□□□□□ -2.15
SDC3O75056 RNU6-1088P-201ENST00000516850 104 ntBASIC1.59□□□□□ -2.15
SDC3O75056 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.59□□□□□ -2.15
SDC3O75056 CBX3P4-201ENST00000538909 354 ntBASIC1.59□□□□□ -2.15
SDC3O75056 HSBP1P1-201ENST00000555205 166 ntBASIC1.59□□□□□ -2.15
SDC3O75056 AC015720.1-201ENST00000565251 277 ntBASIC1.59□□□□□ -2.15
SDC3O75056 SUB1P4-201ENST00000566062 339 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 172.3 ms