Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 RPS3AP52-201ENST00000435639 297 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 OR2AQ1P-201ENST00000451972 200 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 SNORD5.1-201ENST00000458800 75 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 TOMM22P6-201ENST00000465035 409 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 MTND5P9-201ENST00000503854 1755 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 MIR5696-201ENST00000578474 85 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 AC243960.4-201ENST00000600532 288 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 AC025754.2-201ENST00000606491 432 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 AC005296.1-201ENST00000616145 209 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 Y_RNA.99-201ENST00000363138 105 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 Y_RNA.166-201ENST00000363730 102 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 RNA5SP138-201ENST00000365098 114 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 Y_RNA.332-201ENST00000365271 113 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 Y_RNA.473-201ENST00000384333 102 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 SNORA12.2-201ENST00000391040 156 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 AL033519.2-201ENST00000403958 392 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 MIR1283-2-201ENST00000408621 87 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 BX510359.4-201ENST00000423750 193 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 AC003989.2-201ENST00000440224 169 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 MIR6845-201ENST00000613182 61 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 uc_338.20-201ENST00000621563 178 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 AC099654.14-201ENST00000638599 341 ntBASIC2.03□□□□□ -2.08
CPSF3Q9UKF6 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.09
CPSF3Q9UKF6 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 RNA5SP276-201ENST00000362580 94 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 SNORA8-201ENST00000384574 139 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 Y_RNA.533-201ENST00000384596 114 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC074085.1-201ENST00000413598 418 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC243428.1-201ENST00000421099 264 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC244636.1-201ENST00000421152 228 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AL445685.2-201ENST00000422551 342 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC103851.1-201ENST00000506833 274 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 PRDX4P1-201ENST00000507189 574 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC107393.1-201ENST00000512403 346 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC026782.1-201ENST00000512952 449 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 RNU5F-4P-201ENST00000516581 114 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 RNU6-1016P-201ENST00000516689 94 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 SNORA20.3-201ENST00000516880 132 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 RNA5SP364-201ENST00000516938 78 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC011494.1-201ENST00000596454 237 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC018462.2-201ENST00000605375 395 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 AC022306.2-201ENST00000617563 647 ntBASIC2.02□□□□□ -2.09
CPSF3Q9UKF6 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 MIR340-201ENST00000362125 95 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 MIR583-201ENST00000384846 75 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 MIR9-3-201ENST00000385084 90 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 SNORA40.18-201ENST00000391200 128 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 RNA5SP212-201ENST00000391223 107 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 AC004866.1-201ENST00000411748 78 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 AC138393.2-201ENST00000414742 246 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 HMGB1P18-201ENST00000438801 619 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 AL035666.1-201ENST00000446195 348 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 RPL23AP6-201ENST00000446637 472 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 RNU7-14P-201ENST00000459331 62 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 AC007215.1-201ENST00000464893 276 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 RPS29P11-201ENST00000496507 171 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 RNU6-295P-201ENST00000516901 104 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 AC005562.2-201ENST00000618264 111 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.01□□□□□ -2.09
CPSF3Q9UKF6 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2□□□□□ -2.09
CPSF3Q9UKF6 Y_RNA.88-201ENST00000363029 99 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 SNORD114-6-201ENST00000364393 72 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 RNU4-9P-201ENST00000364951 139 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 SNORD81.2-201ENST00000365153 76 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 MIR504-201ENST00000385065 83 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2□□□□□ -2.09
CPSF3Q9UKF6 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2□□□□□ -2.09
CPSF3Q9UKF6 SNRPEP8-201ENST00000442866 260 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 AC007677.1-201ENST00000445757 515 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 AC107399.1-201ENST00000451226 265 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 MTND4P17-201ENST00000470444 350 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 RPL30P10-201ENST00000488148 337 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 AC116353.2-201ENST00000505332 712 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2□□□□□ -2.09
CPSF3Q9UKF6 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2□□□□□ -2.09
CPSF3Q9UKF6 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2□□□□□ -2.09
CPSF3Q9UKF6 MIR4273-201ENST00000582824 84 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2□□□□□ -2.09
CPSF3Q9UKF6 RPL17P51-201ENST00000605218 238 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2□□□□□ -2.09
CPSF3Q9UKF6 uc_338.5-201ENST00000611839 155 ntBASIC2□□□□□ -2.09
CPSF3Q9UKF6 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
CPSF3Q9UKF6 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 186.9 ms