Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC016700.2-201ENST00000446011 156 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 SNORD124-201ENST00000459577 104 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC015911.1-201ENST00000495111 156 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 HMGB1P29-201ENST00000505659 499 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RNU6-1041P-201ENST00000516254 102 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RNU2-34P-201ENST00000516534 121 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC109479.2-201ENST00000517842 174 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RSL24D1P11-201ENST00000591045 491 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC242498.1-201ENST00000604134 111 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC093913.1-201ENST00000614178 329 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC126177.8-201ENST00000618339 1015 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC243994.1-201ENST00000618627 109 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 Y_RNA.22-201ENST00000362492 102 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 U3.8-201ENST00000363675 217 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RNU6-190P-201ENST00000384154 102 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AL512286.1-201ENST00000439244 400 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC091951.3-201ENST00000504093 246 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RNA5SP476-201ENST00000516613 103 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 SNORA62.5-201ENST00000516634 120 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RNU6-410P-201ENST00000517006 107 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC090049.2-201ENST00000550377 109 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC022432.1-201ENST00000595739 310 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC022217.4-201ENST00000604389 163 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RNU4-5P-201ENST00000607255 135 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 AC131159.1-201ENST00000621854 213 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 MIR338-201ENST00000636369 67 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 MTND4P14-201ENST00000435799 1354 ntBASIC0.33□□□□□ -2.36
SCN3AQ9NY46 RNU6-545P-201ENST00000362681 104 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 RNA5SP361-201ENST00000362686 118 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 SNORD18A-201ENST00000363753 72 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 RNU4-12P-201ENST00000365233 139 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 RNU6-245P-201ENST00000384020 107 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 RNU6-418P-201ENST00000384035 107 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 SNORD116-13-201ENST00000384408 92 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 MIR653-201ENST00000385279 96 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 AL451046.2-201ENST00000403074 277 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.32□□□□□ -2.36
SCN3AQ9NY46 RN7SKP200-201ENST00000410564 320 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 GPR143P-201ENST00000434155 205 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 AC119618.1-201ENST00000434191 222 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.32□□□□□ -2.36
SCN3AQ9NY46 RNU6-496P-201ENST00000516145 99 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 AC106038.2-201ENST00000520706 568 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 MIR4509-3-201ENST00000578671 94 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 MIR4509-2-201ENST00000583920 94 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 AC023932.2-201ENST00000603176 175 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 Z99497.2-201ENST00000603634 310 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 MIR4509-1-201ENST00000618224 94 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 AL359697.1-201ENST00000624879 587 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 MIR5087-201ENST00000635826 76 ntBASIC0.32□□□□□ -2.36
SCN3AQ9NY46 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.32□□□□□ -2.36
SCN3AQ9NY46 RNY4P16-201ENST00000364768 94 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 Y_RNA.287-201ENST00000364853 94 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 RNU6-1242P-201ENST00000391052 103 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 MIR300-201ENST00000401138 83 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 CDK8P2-201ENST00000415020 547 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.31□□□□□ -2.36
SCN3AQ9NY46 LINC01399-202ENST00000458450 244 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 RNU11-2P-201ENST00000516898 142 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AC016256.1-201ENST00000547971 354 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 TPRKBP2-201ENST00000565969 475 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AC010620.1-201ENST00000601088 1102 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AL513423.1-201ENST00000621695 132 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AC009878.1-201ENST00000621819 340 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AC067863.3-201ENST00000624172 122 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
SCN3AQ9NY46 U3.9-201ENST00000363823 204 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 RNU6-969P-201ENST00000383900 105 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 RNU6-975P-201ENST00000384296 105 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 RNU6-110P-201ENST00000384508 104 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 RNA5SP63-201ENST00000391225 112 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AL031577.2-201ENST00000404133 280 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AC092423.1-201ENST00000430165 186 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 MTCO3P18-201ENST00000440206 761 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 RNU6-123P-201ENST00000516163 102 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AL390123.1-201ENST00000603216 237 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 AC080013.3-201ENST00000606839 578 ntBASIC0.31□□□□□ -2.36
SCN3AQ9NY46 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.31□□□□□ -2.36
SCN3AQ9NY46 CASC19-280ENST00000642102 1351 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNY1P12-201ENST00000364251 105 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNU6-434P-201ENST00000384376 107 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNU6-541P-201ENST00000384709 110 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 MIR1185-1-201ENST00000408598 86 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 NDUFB4P10-201ENST00000452541 359 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AC008628.2-201ENST00000502605 298 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 Y_RNA.681-201ENST00000516445 113 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 RNA5SP337-201ENST00000517007 109 ntBASIC0.3□□□□□ -2.36
SCN3AQ9NY46 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.3□□□□□ -2.36
SCN3AQ9NY46 MTND4LP18-201ENST00000526864 291 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 178.3 ms