Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 U8.13-201ENST00000390842 128 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 RPS26P42-201ENST00000413485 326 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 MTATP6P13-201ENST00000438531 667 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 MTND1P17-201ENST00000448961 204 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 MTCO3P8-201ENST00000453691 755 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 RNU6-329P-201ENST00000459618 107 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 MIR4299-201ENST00000577899 72 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 MIR4255-201ENST00000579351 72 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 MIR4742-201ENST00000581069 85 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 MIR3945-201ENST00000581853 98 ntBASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
EXOSC3Q9NQT5 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 Y_RNA.248-201ENST00000364501 109 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 U8.10-201ENST00000384260 133 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 Y_RNA.473-201ENST00000384333 102 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 MIR32-201ENST00000384965 70 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AC004866.1-201ENST00000411748 78 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 USP9YP30-201ENST00000430729 455 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AL445305.1-201ENST00000432577 575 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 MTND2P29-201ENST00000438595 412 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AL353689.1-201ENST00000438895 199 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 FGF7P6-202ENST00000451282 293 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AC016925.1-201ENST00000458303 298 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 RNA5SP57-201ENST00000459463 123 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 RNVU1-2-201ENST00000516326 135 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AC087441.2-201ENST00000529141 262 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AL096840.1-201ENST00000603287 93 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 CYP2C61P-201ENST00000604072 290 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 AC005858.4-201ENST00000623191 700 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 SCARNA4-201ENST00000629045 128 ntBASIC1.59□□□□□ -2.15
EXOSC3Q9NQT5 MTND5P9-201ENST00000503854 1755 ntBASIC1.59□□□□□ -2.16
EXOSC3Q9NQT5 ZNF204P-201ENST00000416749 2397 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 MIR676-201ENST00000390702 67 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AL158823.1-201ENST00000418441 478 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AL139396.1-201ENST00000421137 167 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 EIF4EP2-201ENST00000422816 654 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AC010531.2-201ENST00000465012 153 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 RNU1-54P-201ENST00000517181 120 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AC104581.2-201ENST00000572227 430 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 MIR4273-201ENST00000582824 84 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AL158827.2-201ENST00000602494 330 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 RPL17P51-201ENST00000605218 238 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AL773524.1-201ENST00000614065 229 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 TCL6_2.1-201ENST00000615162 119 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 SDR42E1P4-201ENST00000620894 481 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AC084768.2-201ENST00000622736 221 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 AL691447.3-201ENST00000635020 330 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 CASC19-280ENST00000642102 1351 ntBASIC1.58□□□□□ -2.16
EXOSC3Q9NQT5 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 Y_RNA.48-201ENST00000362710 103 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 RNU4-9P-201ENST00000364951 139 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 RNU6-418P-201ENST00000384035 107 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 Y_RNA.533-201ENST00000384596 114 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 SNORA40.18-201ENST00000391200 128 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 RNU6-510P-201ENST00000391239 108 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 MIR548F5-201ENST00000408421 86 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 MTND3P8-201ENST00000412909 339 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 HMGB1P18-201ENST00000438801 619 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 MTND5P5-201ENST00000503764 376 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 AC026470.2-201ENST00000561492 181 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 AC011712.1-201ENST00000588959 234 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 AC022513.1-201ENST00000624512 117 ntBASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
EXOSC3Q9NQT5 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 CBX3P1-201ENST00000325243 554 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 Y_RNA.132-201ENST00000363421 102 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 RNA5SP363-201ENST00000365072 115 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 RNU6-842P-201ENST00000384269 107 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 SNORA8-201ENST00000384574 139 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 MIR1283-1-201ENST00000408494 87 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 AC244636.1-201ENST00000421152 228 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 MTCO1P44-201ENST00000441935 243 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 RPL23AP6-201ENST00000446637 472 ntBASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.56□□□□□ -2.16
EXOSC3Q9NQT5 AC007215.1-201ENST00000464893 276 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms