Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.13□□□□□ -2.23
EXOSC4Q9NPD3 AC233981.2-201ENST00000611524 1614 ntBASIC1.13□□□□□ -2.23
EXOSC4Q9NPD3 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
EXOSC4Q9NPD3 Y_RNA.373-201ENST00000365600 103 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-1286P-201ENST00000383871 107 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 MIR514A2-201ENST00000385131 88 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 MIR514A3-201ENST00000385132 88 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 MIR450B-201ENST00000401182 78 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC004866.1-201ENST00000411748 78 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC245047.4-201ENST00000433189 144 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 HSPE1P9-201ENST00000440046 311 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 ATP5J2P3-201ENST00000451550 258 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 MTCO3P8-201ENST00000453691 755 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 RNU1-123P-201ENST00000458950 160 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 U8.21-201ENST00000459536 136 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 HMGN2P9-201ENST00000476875 229 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AF186996.7-201ENST00000492781 209 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 MTCYBP18-201ENST00000501056 747 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC107401.1-201ENST00000503426 685 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 RNA5SP384-201ENST00000516615 116 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 Y_RNA.693-201ENST00000516641 110 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 RNA5SP437-201ENST00000517249 129 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AP003033.1-201ENST00000527244 415 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC005668.1-201ENST00000571142 476 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 MIR4303-201ENST00000581299 66 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AP000907.4-201ENST00000604143 237 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 MIR3976-201ENST00000606807 139 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC103591.3-201ENST00000608684 209 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC092954.2-201ENST00000609103 430 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC126177.8-201ENST00000618339 1015 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 AC095038.3-201ENST00000634439 195 ntBASIC1.12□□□□□ -2.23
EXOSC4Q9NPD3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-562P-201ENST00000362731 107 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-1252P-201ENST00000363054 104 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 RNU1-96P-201ENST00000364163 162 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-522P-201ENST00000364497 107 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-968P-201ENST00000384076 107 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-483P-201ENST00000384088 108 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-214P-201ENST00000384130 107 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 Y_RNA.481-201ENST00000384373 102 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 MIR548B-201ENST00000385247 97 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 EIF4E2P1-201ENST00000393781 255 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 Y_RNA.615-201ENST00000410769 117 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 MTND1P29-201ENST00000448112 647 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 RPL26P26-201ENST00000480251 434 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AC091885.1-201ENST00000506658 268 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AC084364.2-201ENST00000546924 395 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 PIGPP4-201ENST00000584447 307 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AC010525.2-201ENST00000590920 195 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AC005562.2-201ENST00000618264 111 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AC073534.2-201ENST00000620377 381 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 AL359880.1-201ENST00000621879 266 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 OR4G1P-203ENST00000641984 1631 ntBASIC1.11□□□□□ -2.23
EXOSC4Q9NPD3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-457P-201ENST00000363999 107 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 Y_RNA.231-201ENST00000364358 102 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 SNORD1A-201ENST00000364968 72 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AL117342.1-201ENST00000404861 406 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 MIR1283-1-201ENST00000408494 87 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 MIR1267-201ENST00000408723 78 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 RNU2-7P-201ENST00000410794 178 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 UBE2V1P8-201ENST00000437166 265 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 RNU7-187P-201ENST00000458985 68 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 RPL31P58-201ENST00000469001 379 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC108210.2-201ENST00000503681 201 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 HMGN1P13-201ENST00000505795 138 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 RRN3P3-201ENST00000549207 578 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 CPDP1-201ENST00000579660 283 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 FGF7P1-201ENST00000582820 288 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC146944.4-201ENST00000602697 718 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 RPL17P51-201ENST00000605218 238 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC245008.1-201ENST00000608123 476 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC104458.1-201ENST00000608243 463 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AL512598.1-201ENST00000610158 273 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 AC010615.1-201ENST00000594254 1764 ntBASIC1.1□□□□□ -2.23
EXOSC4Q9NPD3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms