Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 AP001372.4-201ENST00000524889 472 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 MIR4513-201ENST00000581077 86 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 AC146944.4-201ENST00000602697 718 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 FAM71BP1-201ENST00000604431 523 ntBASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
VCX3AQ9NNX9 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU6-227P-201ENST00000362865 103 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU6-181P-201ENST00000363225 107 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 SNORD114-24-201ENST00000365029 72 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU6-606P-201ENST00000384721 111 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU6-903P-201ENST00000391270 109 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU2-29P-201ENST00000410423 189 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RN7SKP200-201ENST00000410564 320 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNA5SP494-201ENST00000410653 129 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RPS6P15-201ENST00000431996 751 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 SNORD42A-201ENST00000459584 64 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AC105758.1-201ENST00000506038 399 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 SNORD79.1-201ENST00000516069 84 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU1-41P-201ENST00000516161 162 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU1-48P-201ENST00000516400 162 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU1-142P-201ENST00000516682 145 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 RNU6-445P-201ENST00000516949 107 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AP002963.1-201ENST00000530590 184 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AL590705.4-201ENST00000532209 134 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AL137161.1-201ENST00000532231 390 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 MIR3941-201ENST00000582572 103 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AF131215.7-201ENST00000602443 707 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AC068790.2-201ENST00000602601 557 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AL513534.2-201ENST00000603836 250 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 U2.17-201ENST00000611454 95 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 AC139792.3-201ENST00000623525 224 ntBASIC0.72□□□□□ -2.29
VCX3AQ9NNX9 HSBP1P2-201ENST00000299671 229 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 RNU4-21P-201ENST00000362802 126 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 MIR608-201ENST00000384820 100 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 MIR586-201ENST00000385035 97 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 RNU6-248P-201ENST00000410720 107 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 RPS26P42-201ENST00000413485 326 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 MTND3P9-201ENST00000429526 346 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AC245047.7-201ENST00000440265 293 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 SNRPFP3-201ENST00000457792 225 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 HMGB1P29-201ENST00000505659 499 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AC010493.1-201ENST00000513479 292 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AC025647.1-201ENST00000517879 253 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AP000873.5-201ENST00000533906 236 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 MRPS36P4-201ENST00000534436 298 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AL121579.1-201ENST00000555129 305 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AC004817.2-201ENST00000561794 651 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AC022432.1-201ENST00000595739 310 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 RMST_3.1-201ENST00000611651 109 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 AC009161.2-201ENST00000624626 138 ntBASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.71□□□□□ -2.3
VCX3AQ9NNX9 FGF7P2-201ENST00000332473 296 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 SNORA67.2-201ENST00000384300 149 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 MIR532-201ENST00000385025 91 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 MIR605-201ENST00000385078 83 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 RNU6-440P-201ENST00000390882 105 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 SNORD12-201ENST00000391002 90 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AF228730.1-201ENST00000397972 663 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 RNU2-64P-201ENST00000411315 191 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AL513124.1-201ENST00000450410 614 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 snoU13.15-201ENST00000459407 104 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 RNU7-138P-201ENST00000459479 64 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AC025465.4-201ENST00000513422 638 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AC080078.2-201ENST00000603766 501 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AC025449.1-201ENST00000603896 529 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AC024933.1-201ENST00000608472 348 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AC087683.2-201ENST00000611384 326 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AL359075.3-201ENST00000613288 217 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 AC122133.1-201ENST00000613964 233 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 SNORD3E-202ENST00000627253 216 ntBASIC0.7□□□□□ -2.3
VCX3AQ9NNX9 RNU6-1106P-201ENST00000390845 107 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 AC245047.3-201ENST00000429428 127 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 SRRM1P2-201ENST00000464531 1192 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 AC090142.3-201ENST00000519012 385 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 AC060788.1-201ENST00000521318 469 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 MTATP6P3-201ENST00000581686 676 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 GHRLOS.1-201ENST00000610995 70 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 snoZ196.1-201ENST00000625269 89 ntBASIC0.69□□□□□ -2.3
VCX3AQ9NNX9 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 RNU6-1286P-201ENST00000383871 107 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 RNU6-969P-201ENST00000383900 105 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms