Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 AL451046.2-201ENST00000403074 277 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 HSFY7P-201ENST00000432672 318 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 HSFY8P-201ENST00000437934 318 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 HMGB1P29-201ENST00000505659 499 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AP002001.1-203ENST00000534002 267 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AC022432.1-201ENST00000595739 310 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AC010620.1-201ENST00000601088 1102 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 Z99497.2-201ENST00000603634 310 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 Z98751.3-201ENST00000604447 521 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AC064807.4-201ENST00000607201 407 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AC131159.1-201ENST00000621854 213 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AC011155.2-201ENST00000623202 216 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AC067863.3-201ENST00000624172 122 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 AL445984.1-201ENST00000637834 659 ntBASIC0.29□□□□□ -2.36
KIAA1549Q9HCM3 SNORD18A-201ENST00000363753 72 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 RNU6-39P-201ENST00000384344 107 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 MIR300-201ENST00000401138 83 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 EXOSC3P1-201ENST00000448649 500 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC104982.1-201ENST00000478775 574 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 RNU4-54P-201ENST00000516428 129 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 RNU2-34P-201ENST00000516534 121 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 MTND4LP18-201ENST00000526864 291 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC022878.1-201ENST00000530684 149 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 MIR5695-201ENST00000579717 85 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC073539.2-201ENST00000597113 165 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AL031281.1-201ENST00000604049 488 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC093913.1-201ENST00000614178 329 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 MIR5087-201ENST00000635826 76 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 RNU6-1029P-201ENST00000384109 107 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 SNORA24.1-201ENST00000384401 135 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 SNORD116-13-201ENST00000384408 92 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 RNU6-1000P-201ENST00000391066 106 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 RNA5SP63-201ENST00000391225 112 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AL163973.1-201ENST00000484753 577 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 TPRKBP2-201ENST00000565969 475 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC080013.3-201ENST00000606839 578 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC027807.2-201ENST00000616099 408 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 7SK.10-201ENST00000621414 298 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 AC138649.3-201ENST00000622154 254 ntBASIC0.28□□□□□ -2.36
KIAA1549Q9HCM3 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 RNU6-793P-201ENST00000384233 104 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 SNORA80D-201ENST00000384488 135 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 MIR1-2-201ENST00000384961 85 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 MTCO3P18-201ENST00000440206 761 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 LINC01399-202ENST00000458450 244 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AC016550.1-201ENST00000505348 785 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 RBBP4P6-201ENST00000508098 202 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AP003327.1-201ENST00000529684 127 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 RSL24D1P11-201ENST00000591045 491 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AC116165.2-201ENST00000616705 206 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AC068792.1-201ENST00000621354 417 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 AL359697.1-201ENST00000624879 587 ntBASIC0.27□□□□□ -2.37
KIAA1549Q9HCM3 RNU6-1287P-201ENST00000362914 107 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 SNORA50A-201ENST00000384225 134 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 RNU6-1060P-201ENST00000384664 107 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AL355796.1-201ENST00000406706 323 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 RNU2-8P-201ENST00000410727 190 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 RPS26P5-201ENST00000418544 335 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AC010975.2-201ENST00000427781 588 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 MED13P1-201ENST00000428342 171 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AC002350.1-201ENST00000490759 375 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AC079140.5-201ENST00000507882 310 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AC022868.1-201ENST00000517767 391 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AP003181.2-201ENST00000528941 181 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AC025423.5-201ENST00000550230 219 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AC090049.2-201ENST00000550377 109 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 MIR6718-201ENST00000616153 80 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AL603839.4-201ENST00000624658 1005 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 MTND4P5-201ENST00000435821 1374 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 CASC19-280ENST00000642102 1351 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 RNU6-199P-201ENST00000362954 107 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 RNU6-179P-201ENST00000363350 107 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 RNU6-969P-201ENST00000383900 105 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 RNU6-975P-201ENST00000384296 105 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 RNU6-809P-201ENST00000384461 107 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 SNORD12-201ENST00000391002 90 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 CDK8P2-201ENST00000415020 547 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 C1DP2-201ENST00000418167 426 ntBASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.26□□□□□ -2.37
KIAA1549Q9HCM3 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms