Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SNORD14A-201ENST00000606526 91 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 MIR6895-201ENST00000613497 78 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 MTND5P9-201ENST00000503854 1755 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 RNU6-438P-201ENST00000365561 103 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 SNORA26.3-201ENST00000391119 136 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 USP9YP30-201ENST00000430729 455 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 AC245102.2-201ENST00000448956 180 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 AC087477.1-201ENST00000465747 340 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 AC107032.1-201ENST00000485945 480 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 AC034114.1-201ENST00000520293 285 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 RPS3AP23-202ENST00000574601 686 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 MIR4255-201ENST00000579351 72 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 MIR5694-201ENST00000581190 76 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 AC080100.1-201ENST00000624239 5356 ntBASIC2.18□□□□□ -2.06
ZNF541Q9H0D2 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 RNU6-611P-201ENST00000384276 104 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 RNU1-148P-201ENST00000384472 162 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 RNU6-601P-201ENST00000384540 107 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 MIR320B2-201ENST00000408479 138 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 EDDM3CP-201ENST00000415977 425 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 PDCL2P1-201ENST00000419302 352 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AL021397.1-201ENST00000451806 248 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AL137159.1-201ENST00000452808 512 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 RPL23AP75-201ENST00000491601 451 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 ANP32BP3-201ENST00000559213 706 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AL031274.2-201ENST00000599419 203 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 SNRPGP17-201ENST00000603780 214 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AL450472.1-202ENST00000637286 180 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 SNORA72.1-201ENST00000363485 129 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 RNU6-1026P-201ENST00000384465 108 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 RNU6-541P-201ENST00000384709 110 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 MIR32-201ENST00000384965 70 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AL357139.1-201ENST00000407792 426 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 MIR548K-201ENST00000408406 116 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 NCOR1P3-201ENST00000420479 303 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 EIF4EP2-201ENST00000422816 654 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 WARS2P1-201ENST00000429678 537 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 HMGN1P12-201ENST00000499125 195 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AC022202.1-201ENST00000613515 211 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AC022306.2-201ENST00000617563 647 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 MIR1248-201ENST00000629190 106 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 AC099654.5-201ENST00000636479 350 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 TPTEP1-208ENST00000636884 213 ntBASIC2.17□□□□□ -2.06
ZNF541Q9H0D2 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 SNORD50.1-201ENST00000362987 71 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 RNU6-1059P-201ENST00000363752 98 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 SNORD81.2-201ENST00000365153 76 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 RNY1P14-201ENST00000384426 108 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 RNU6-1050P-201ENST00000410388 107 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 RNA5SP338-201ENST00000410495 85 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 IPO7P1-201ENST00000442031 636 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 RNU7-14P-201ENST00000459331 62 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 AC018868.1-201ENST00000491307 315 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 RPS23P5-201ENST00000495419 428 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 AC087441.2-201ENST00000529141 262 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 AC018630.3-201ENST00000542637 96 ntBASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.16□□□□□ -2.06
ZNF541Q9H0D2 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
ZNF541Q9H0D2 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 Y_RNA.48-201ENST00000362710 103 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 RNU5B-2P-201ENST00000363036 113 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 Y_RNA.184-201ENST00000363884 108 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 SNORA3A-201ENST00000364113 130 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 RNU6-593P-201ENST00000364716 112 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 RNU4-9P-201ENST00000364951 139 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 RNU6-234P-201ENST00000365229 104 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 Y_RNA.473-201ENST00000384333 102 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 Y_RNA.482-201ENST00000384377 111 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 RNA5SP201-201ENST00000410316 124 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 RNU2-41P-201ENST00000410991 178 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 AC004965.1-201ENST00000413033 213 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 MTATP6P23-201ENST00000440153 476 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 PRELID3BP1-201ENST00000457142 540 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 AC107393.1-201ENST00000512403 346 ntBASIC2.15□□□□□ -2.07
ZNF541Q9H0D2 RNU7-175P-201ENST00000515915 61 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms